Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data

Documentation for package ‘ChIPtest’ version 1.0

ChIPtest_1.0-package	Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-seq Data
ChIPtest_1.0	Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-seq Data
data1	Input data (matrix) for condition A
data4	Input data (matrix) for condition B
est.c	calculate the biologically relevant value c in the null hypothesis H0: TS=c, in assumption-free nonparametric test
NormTransformation	Variance-stabilizing transformation (VST) procedure
TS_kernel	Calculate the Test Statistics for kernel-based nonparametric test.
TS_twosample	Three Nonparametric Test Statistics for two sample ChIP-seq data