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| BaySIC-package | Bayesian Analysis of Significantly Mutated Genes in Cancer |
| BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |
| baysic.data | Organizes data for BaySIC functions |
| baysic.fit | Fits BaySIC BMR model |
| baysic.test | BaySIC Evaluation of SMGs |
| BMR.plot | Visualize Sequence Context BMRs |
| ccds.18 | CCDS Reference Data (Build hg18) |
| ccds.19 | CCDS Reference Data (Build hg19) |
| example.dat | Example Mutation Data (Build hg19) |
| fn.cat | Collapses SNV and reference data into sequence mutation categories |
| fuzzy.FDR.approx | Generate Approximate Fuzzy Rejection Probabilites |
| revcomp | DNA Reverse Complementation |
| write.baysic | Write BaySIC JAGS model files |