divent-package | divent |
abd_freq_count | Abundance Frequency Count of a Community |
abd_species | Abundances of Communities |
abd_sum | Abundances of Communities |
abundances | Species Distributions |
accum_div_phylo | Phylogenetic Diversity Accumulation of a Community |
accum_div_phylo.abundances | Phylogenetic Diversity Accumulation of a Community |
accum_div_phylo.numeric | Phylogenetic Diversity Accumulation of a Community |
accum_ent_phylo | Phylogenetic Diversity Accumulation of a Community |
accum_ent_phylo.abundances | Phylogenetic Diversity Accumulation of a Community |
accum_ent_phylo.numeric | Phylogenetic Diversity Accumulation of a Community |
accum_hill | Diversity Accumulation of a Community |
accum_hill.abundances | Diversity Accumulation of a Community |
accum_hill.numeric | Diversity Accumulation of a Community |
accum_mixing | Spatial Diversity Accumulation of a Community |
accum_sp | Spatial Accumulation of Diversity |
accum_sp_diversity | Spatial Accumulation of Diversity |
accum_sp_entropy | Spatial Accumulation of Diversity |
accum_sp_hill | Spatial Diversity Accumulation of a Community |
accum_sp_mixing | Spatial Accumulation of Diversity |
accum_sp_tsallis | Spatial Diversity Accumulation of a Community |
accum_tsallis | Diversity Accumulation of a Community |
accum_tsallis.abundances | Diversity Accumulation of a Community |
accum_tsallis.numeric | Diversity Accumulation of a Community |
alphahull | alpha-shape calculation |
as.double.species_distribution | Species Distributions |
as.matrix.species_distribution | Species Distributions |
as.numeric.species_distribution | Species Distributions |
as_abundances | Species Distributions |
as_abundances.character | Species Distributions |
as_abundances.data.frame | Species Distributions |
as_abundances.factor | Species Distributions |
as_abundances.matrix | Species Distributions |
as_abundances.numeric | Species Distributions |
as_abundances.wmppp | Species Distributions |
as_phylo_divent | Class phylo_divent |
as_probabilities | Species Distributions |
as_probabilities.character | Species Distributions |
as_probabilities.data.frame | Species Distributions |
as_probabilities.factor | Species Distributions |
as_probabilities.matrix | Species Distributions |
as_probabilities.numeric | Species Distributions |
as_probabilities.wmppp | Species Distributions |
as_species_distribution | Species Distributions |
as_species_distribution.character | Species Distributions |
as_species_distribution.data.frame | Species Distributions |
as_species_distribution.factor | Species Distributions |
as_species_distribution.matrix | Species Distributions |
as_species_distribution.numeric | Species Distributions |
as_species_distribution.wmppp | Species Distributions |
autoplot.accumulation | Plot Accumulation Objects |
autoplot.accum_sp | Spatial Accumulation of Diversity |
autoplot.profile | Plot Profile Objects |
autoplot.species_distribution | Plot Profile Objects |
autoplot.wmppp | ggplot method to plot wmppp objects |
coverage | Sample Coverage of a Community |
coverage.abundances | Sample Coverage of a Community |
coverage.numeric | Sample Coverage of a Community |
coverage_to_size | Sample Coverage of a Community |
coverage_to_size.abundances | Sample Coverage of a Community |
coverage_to_size.numeric | Sample Coverage of a Community |
divent | divent |
div_gen_simpson | Generalized Simpson's Diversity |
div_gen_simpson.numeric | Generalized Simpson's Diversity |
div_gen_simpson.species_distribution | Generalized Simpson's Diversity |
div_hill | Hill number of a Community |
div_hill.numeric | Hill number of a Community |
div_hill.species_distribution | Hill number of a Community |
div_hurlbert | Hurlbert Diversity of a Community |
div_hurlbert.numeric | Hurlbert Diversity of a Community |
div_hurlbert.species_distribution | Hurlbert Diversity of a Community |
div_part | Diversity partition |
div_pd | Faith's Phylogenetic Diversity of a Community |
div_pd.numeric | Faith's Phylogenetic Diversity of a Community |
div_pd.species_distribution | Faith's Phylogenetic Diversity of a Community |
div_phylo | Phylogenetic Diversity of a Community |
div_phylo.numeric | Phylogenetic Diversity of a Community |
div_phylo.species_distribution | Phylogenetic Diversity of a Community |
div_richness | Number of Species of a Community |
div_richness.numeric | Number of Species of a Community |
div_richness.species_distribution | Number of Species of a Community |
div_similarity | Similarity-Based Diversity of a Community |
div_similarity.numeric | Similarity-Based Diversity of a Community |
div_similarity.species_distribution | Similarity-Based Diversity of a Community |
ent_allen | Allen et al.'s Phylogenetic Entropy of a Community |
ent_allen.numeric | Allen et al.'s Phylogenetic Entropy of a Community |
ent_allen.species_distribution | Allen et al.'s Phylogenetic Entropy of a Community |
ent_gen_simpson | Generalized Simpson's Entropy |
ent_gen_simpson.numeric | Generalized Simpson's Entropy |
ent_gen_simpson.species_distribution | Generalized Simpson's Entropy |
ent_hurlbert | Hurlbert Entropy of a Community |
ent_hurlbert.numeric | Hurlbert Entropy of a Community |
ent_hurlbert.species_distribution | Hurlbert Entropy of a Community |
ent_phylo | Phylogenetic Entropy of a Community |
ent_phylo.numeric | Phylogenetic Entropy of a Community |
ent_phylo.species_distribution | Phylogenetic Entropy of a Community |
ent_rao | Rao's Quadratic Entropy of a Community |
ent_rao.numeric | Rao's Quadratic Entropy of a Community |
ent_rao.species_distribution | Rao's Quadratic Entropy of a Community |
ent_shannon | Shannon's Entropy of a Community |
ent_shannon.numeric | Shannon's Entropy of a Community |
ent_shannon.species_distribution | Shannon's Entropy of a Community |
ent_similarity | Similarity-Based Entropy of a Community |
ent_similarity.numeric | Similarity-Based Entropy of a Community |
ent_similarity.species_distribution | Similarity-Based Entropy of a Community |
ent_simpson | Simpson's Entropy of a Community |
ent_simpson.numeric | Simpson's Entropy of a Community |
ent_simpson.species_distribution | Simpson's Entropy of a Community |
ent_sp_simpson | Spatially Explicit Simpson's Entropy |
ent_sp_simpsonEnvelope | Spatially Explicit Simpson's Entropy |
ent_tsallis | Tsallis Entropy of a Community |
ent_tsallis.numeric | Tsallis Entropy of a Community |
ent_tsallis.species_distribution | Tsallis Entropy of a Community |
exp_q | Deformed exponential |
e_n_q | Grassberger's expectation of n^q |
fit_rac | Fit a distribution |
fit_rac.numeric | Fit a distribution |
fit_rac.species_distribution | Fit a distribution |
fun_ordinariness | Functional ordinariness of a community |
fun_similarity | Functional similarity |
is_abundances | Species Distributions |
is_phylo_divent | Class phylo_divent |
is_probabilities | Species Distributions |
is_species_distribution | Species Distributions |
ln_q | Deformed logarithm |
metacommunity | Aggregate communities into a metacommunity |
metacommunity.abundances | Aggregate communities into a metacommunity |
metacommunity.matrix | Aggregate communities into a metacommunity |
mock_3sp | Mock data |
mock_3sp_abd | Mock data |
mock_3sp_dist | Mock data |
mock_3sp_tree | Mock data |
non_species_columns | Non-Species columns |
paracou_6 | Paracou plot 6 |
paracou_6_abd | Paracou plot 6 |
paracou_6_fundist | Functional distances between Paracou plot 6 species |
paracou_6_taxo | Taxonomy of Paracou plot 6 species |
paracou_6_wmppp | Paracou plot 6 |
phylo_divent | Class phylo_divent |
plot.accum_sp | Spatial Accumulation of Diversity |
plot.phylo_divent | Plot phylo_divent Objects |
plot.species_distribution | Plot Profile Objects |
plot_map | Spatial Accumulation of Diversity |
probabilities | Probabilities of Species |
probabilities.abundances | Probabilities of Species |
probabilities.numeric | Probabilities of Species |
prob_species | Abundances of Communities |
profile_hill | Diversity Profile of a Community |
profile_hill.numeric | Diversity Profile of a Community |
profile_hill.species_distribution | Diversity Profile of a Community |
profile_phylo | Phylogenetic Diversity Profile of a Community |
profile_phylo.numeric | Phylogenetic Diversity Profile of a Community |
profile_phylo.species_distribution | Phylogenetic Diversity Profile of a Community |
profile_similarity | Similarity-Based Diversity Profile of a Community |
profile_similarity.numeric | Similarity-Based Diversity Profile of a Community |
profile_similarity.species_distribution | Similarity-Based Diversity Profile of a Community |
rcommunity | Random communities |
rlseries | Log-Series Distribution |
rspcommunity | Random communities |
species_distribution | Species Distributions |