pathfindR.data 2.1.0
Major changes
- Updated hsa KEGG pathways gene set objects
kegg_genes
and kegg_descriptions
- Updated mmu KEGG pathways gene set objects
mmu_kegg_genes and mmu_kegg_descriptions
- Updated Reactome gene set objects
reactome_genes and
reactome_descriptions
- Updated BioCarta gene set objects
biocarta_genes and
biocarta_descriptions
- Updated GO gene set objects
go_all_genes and
GO_all_terms_df
- Updated the BioGRID PIN adjacency list
biogrid_adj_list
- Updated the KEGG adjacency list
kegg_adj_list
- Updated the STRING adjacency lists
mmu_string_adj_list
and string_adj_list
- Updated the example data:
example_custom_genesets_result,
example_pathfindR_output,
example_pathfindR_output_clustered,
example_comparison_output and
example_mmu_output
- Updated the
example_active_snws data
- updated the manifest data frame
pathfindR.data_updates
pathfindR.data 2.0.0
Major changes
- Renamed example input/output data for better organization and easier
access
pathfindR.data 1.1.3
Major changes
- Updated (hsa) KEGG pathways gene set objects
kegg_genes
and kegg_descriptions
- Updated mmu KEGG pathways gene set objects
mmu_kegg_genes and mmu_kegg_descriptions
- Updated Reactome gene set objects
reactome_genes and
reactome_descriptions
- Updated BioCarta gene set objects
biocarta_genes and
biocarta_descriptions
- Updated GO gene set objects
go_all_genes and
GO_all_terms_df
- Updated the BioGRID PIN adjacency list
biogrid_adj_list
- Updated the KEGG adjacency list
kegg_adj_list
- Updated the IntAct PIN adjacency list
intact_adj_list
- Updated the example data:
RA_output,
RA_clustered, RA_comparison_output and
myeloma_output
pathfindR.data 1.1.2
Major changes
- Updated (hsa) KEGG pathways gene set objects
kegg_genes
and kegg_descriptions
- Updated mmu KEGG pathways gene set objects
mmu_kegg_genes and mmu_kegg_descriptions
- Updated Reactome gene set objects
reactome_genes and
reactome_descriptions
- Updated BioCarta gene set objects
biocarta_genes and
biocarta_descriptions
- Updated GO gene set objects
go_all_genes and
GO_all_terms_df
- Updated example data
RA_output,
RA_clustered, RA_comparison_output and
myeloma_output
- Updated the BioGRID PIN adjacency list
biogrid_adj_list
- Updated the STRING PIN adjacency list
string_adj_list
- Updated the mmu STRING PIN adjacency list
mmu_string_adj_list
- Updated the GeneMania PIN adjacency list
genemania_adj_list
- Updated the KEGG adjacency list
kegg_adj_list
- Updated the IntAct PIN adjacency list
intact_adj_list
- Updated example custom enrichment results data frame
custom_results
Minor changes and bug fixes
- Updated
kegg_genes and kegg_descriptions
so that there are no duplicated term descriptions
- Updated
mmu_kegg_genes and
mmu_kegg_descriptions so that there are no duplicated term
descriptions
pathfindR.data 1.1.1
Major changes
- Added the data frame of data
pathfindR.data_updates,
containing all the data for pathfindR along with descriptions and last
update dates
- Updated example data
RA_output,
RA_clustered, RA_comparison_output and
myeloma_output after addition of the ‘support’ column
Minor changes and bug fixes
- Updated BioGRID PIN so that it does not contain
self-interactions
pathfindR.data 1.1.0
Major changes
- Updated (hsa) KEGG pathways gene set objects
kegg_genes
and kegg_descriptions
- Updated mmu KEGG pathways gene set objects
mmu_kegg_genes and mmu_kegg_descriptions
- Updated Reactome gene set objects
reactome_genes and
reactome_descriptions
- Updated BioCarta gene set objects
biocarta_genes and
biocarta_descriptions
- Updated GO gene set objects
go_all_genes and
GO_all_terms_df
- Updated Human Cell Markers gene set objects
cell_markers_gsets and
cell_markers_descriptions
- Updated the BioGRID PIN adjacency list
biogrid_adj_list
- Updated the IntAct PIN adjacency list
intact_adj_list
- Updated the KEGG adjacency list
kegg_adj_list
- Updated example data
RA_output,
RA_clustered, RA_comparison_output and
myeloma_output
pathfindR.data 1.0.0
Major changes
- Moved all data and related documentation from the main package
pathfindR to this package