KINSIMU 0.1.2
- Added a
NEWS.md file to track changes to the
package.
- A new argument “Th” has been added to EvaluatePanel() function,
meaning the threshold identifying markers with frequency sum differ
significantly from 1 (those with data errors).
- Fixed several bugs in IICAL(), trioPI() and LRgpgcam()
functions;
- Added a pdf file containing the instruction of functions in this
package as a vignette file;
- Updated the examples to make them more visible.
KIMSIMU 0.1.2-2
- Added a new citation information
KINSIMU 0.1.3
- Addressed several issues and improved the accuracy of statistical
calculations within the package.
- –
EvaluatePanel(): Corrected the
calculation of Het_adjusted (adjusted heterozygosity) to
use the standard unbiased estimator formula based on the number of
individuals (n_of_indi) rather than the number of alleles.
This enhances the accuracy of this population genetics parameter.
- –
pedsimu(): Fixed a serious bug that
would result in incorrect data being passed under the assumption of a
maternal mutation
- –
IICAL(), LRpara(),
LRhsip(), LRgpgcam(),
logLR():
- –Adjusted default value for
rare
parameter: The default value of the rare parameter
has been changed from NULL to 0.0001. This
provides a more practical default for handling rare alleles without
requiring explicit user input in many common scenarios.
- –Added input validation for numeric allele positions when
allelename = FALSE: When the
allelename argument is set to FALSE, the
function now includes a check to ensure that the provided allele data
are of a numeric type, representing allele positions. If the input is
not numeric, a clear suggestion is provided to enter allele
positions.