Last updated on 2025-11-03 12:50:06 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.0 | 11.82 | 165.22 | 177.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.0 | 8.01 | 119.04 | 127.05 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.0 | 41.00 | 250.41 | 291.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.0 | 27.00 | 319.30 | 346.30 | OK | |
| r-devel-windows-x86_64 | 0.7.0 | 16.00 | 189.00 | 205.00 | OK | |
| r-patched-linux-x86_64 | 0.7.0 | 11.73 | 160.01 | 171.74 | OK | |
| r-release-linux-x86_64 | 0.7.0 | 10.86 | 42.11 | 52.97 | ERROR | |
| r-release-macos-arm64 | 0.7.0 | 6.00 | 117.00 | 123.00 | OK | |
| r-release-macos-x86_64 | 0.7.0 | 24.00 | 569.00 | 593.00 | OK | |
| r-release-windows-x86_64 | 0.7.0 | 15.00 | 186.00 | 201.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.0 | 9.00 | 282.00 | 291.00 | OK | |
| r-oldrel-macos-x86_64 | 0.7.0 | 28.00 | 579.00 | 607.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.0 | 21.00 | 228.00 | 249.00 | OK |
Version: 0.7.0
Check: examples
Result: ERROR
Running examples in ‘treestructure-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.TreeStructure
> ### Title: Plot TreeStructure tree with cluster and partition variables
> ### Aliases: plot.TreeStructure
>
> ### ** Examples
>
>
> #tree <- ape::read.tree( system.file('sim.nwk', package = 'treestructure') )
> # you can run the example below before plotting
> #struc <- trestruct( tree )
>
> #because it can take a minute or so to run treestructure, we will load it here
> struc <- readRDS( system.file('struc_plot_example.rds', package='treestructure') )
> #plot treestructure object
>
> suppressWarnings(plot(struc))
Error in .plot.TreeStructure.ggtree(x, ...) :
"ggtree" %in% utils::installed.packages()[, 1] is not TRUE
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.7.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘supportValues.Rmd’ using rmarkdown
Quitting from supportValues.Rmd:43-47 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'treeio'
---
Backtrace:
▆
1. └─base::library(treeio)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'supportValues.Rmd' failed with diagnostics:
there is no package called 'treeio'
--- failed re-building ‘supportValues.Rmd’
--- re-building ‘treestructure.Rmd’ using rmarkdown
Quitting from treestructure.Rmd:38-42 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggtree'
---
Backtrace:
▆
1. └─base::library(ggtree)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'treestructure.Rmd' failed with diagnostics:
there is no package called 'ggtree'
--- failed re-building ‘treestructure.Rmd’
--- re-building ‘updating_treestructure.Rmd’ using rmarkdown
Quitting from updating_treestructure.Rmd:69-74 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.plot.TreeStructure.ggtree()`:
! "ggtree" %in% utils::installed.packages()[, 1] is not TRUE
---
Backtrace:
▆
1. ├─base::plot(trestruct_res, use_ggtree = T)
2. └─treestructure:::plot.TreeStructure(trestruct_res, use_ggtree = T)
3. └─treestructure:::.plot.TreeStructure.ggtree(x, ...)
4. └─base::stopifnot("ggtree" %in% utils::installed.packages()[, 1])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'updating_treestructure.Rmd' failed with diagnostics:
"ggtree" %in% utils::installed.packages()[, 1] is not TRUE
--- failed re-building ‘updating_treestructure.Rmd’
SUMMARY: processing the following files failed:
‘supportValues.Rmd’ ‘treestructure.Rmd’ ‘updating_treestructure.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64