CRAN Package Check Results for Maintainer ‘Rahul Satija <seurat at nygenome.org>’

Last updated on 2025-10-21 00:50:51 CEST.

Package NOTE OK
Seurat 6 7
SeuratObject 4 9

Package Seurat

Current CRAN status: NOTE: 6, OK: 7

Version: 5.3.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: CalcDispersion.html:74:1 (CalcDispersion.Rd:28): Warning: missing </ul> before </div> CreateCategoryMatrix.html:58:1 (CreateCategoryMatrix.Rd:18): Warning: missing </ul> before </div> DISP.html:54:1 (DISP.Rd:14): Warning: missing </ul> before </div> FetchResiduals_reference.html:70:1 (FetchResiduals_reference.Rd:26): Warning: missing </ul> before </div> FindSpatiallyVariableFeatures.html:173:1 (FindSpatiallyVariableFeatures.Rd:106): Warning: missing </ul> before </div> JointPCAIntegration.html:174:1 (JointPCAIntegration.Rd:94): Warning: missing </ul> before </div> L2CCA.html:50:1 (L2CCA.Rd:12): Warning: missing </ul> before </div> MVP.html:69:1 (MVP.Rd:25): Warning: missing </ul> before </div> ProjectUMAP.html:191:1 (ProjectUMAP.Rd:109): Warning: missing </ul> before </div> ReadParseBio.html:50:1 (ReadParseBio.Rd:12): Warning: missing </ul> before </div> ReadSTARsolo.html:50:1 (ReadSTARsolo.Rd:12): Warning: missing </ul> before </div> RunICA.html:174:1 (RunICA.Rd:110): Warning: missing </ul> before </div> RunLDA.html:131:1 (RunLDA.Rd:73): Warning: missing </ul> before </div> RunLeiden.html:91:1 (RunLeiden.Rd:41): Warning: missing </ul> before </div> RunMarkVario.html:56:1 (RunMarkVario.Rd:16): Warning: missing </ul> before </div> RunMoransI.html:55:1 (RunMoransI.Rd:14): Warning: missing </ul> before </div> RunTSNE.html:166:1 (RunTSNE.Rd:98): Warning: missing </ul> before </div> SaveAnnoyIndex.html:50:1 (SaveAnnoyIndex.Rd:12): Warning: missing </ul> before </div> SelectIntegrationFeatures5.html:93:1 (SelectIntegrationFeatures5.Rd:38): Warning: missing </ul> before </div> SelectSCTIntegrationFeatures.html:68:1 (SelectSCTIntegrationFeatures.Rd:24): Warning: missing </ul> before </div> SlideSeq-class.html:36:1 (SlideSeq-class.Rd:17): Warning: <h3> anchor "Slots" already defined UnSketchEmbeddings.html:68:1 (UnSketchEmbeddings.Rd:24): Warning: missing </ul> before </div> as.CellDataSet.html:61:1 (as.CellDataSet.Rd:19): Warning: missing </ul> before </div> as.SingleCellExperiment.html:57:1 (as.SingleCellExperiment.Rd:17): Warning: missing </ul> before </div> fortify-Spatial.html:66:1 (fortify-Spatial.Rd:27): Warning: missing </ul> before </div> merge.SCTAssay.html:79:1 (merge.SCTAssay.Rd:32): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 5.3.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BPCells', 'presto' Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 5.3.0
Check: installed package size
Result: NOTE installed size is 11.3Mb sub-directories of 1Mb or more: R 2.0Mb libs 8.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 5.3.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BPCells', 'monocle', 'presto' Flavor: r-oldrel-macos-x86_64

Package SeuratObject

Current CRAN status: NOTE: 4, OK: 9

Version: 5.2.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: CheckLayersName.html:50:1 (CheckLayersName.Rd:12): Warning: missing </ul> before </div> SeuratObject-options.html:99:1 (SeuratObject-options.Rd:47): Warning: missing </ul> before </div> SparseEmptyMatrix.html:50:1 (SparseEmptyMatrix.Rd:12): Warning: missing </ul> before </div> Theta.html:46:1 (Theta.Rd:10): Warning: missing </ul> before </div> dot-GetConsensusFeatures.html:61:1 (dot-GetConsensusFeatures.Rd:18): Warning: missing </ul> before </div> dot-GetVariableFeatures.html:68:1 (dot-GetVariableFeatures.Rd:23): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 5.2.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘BPCells’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64