Last updated on 2024-06-14 00:53:58 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.1-0 | 5.72 | 206.58 | 212.30 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 3.1-0 | 5.52 | 123.63 | 129.15 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 3.1-0 | 268.31 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 3.1-0 | 273.21 | NOTE | |||
| r-devel-windows-x86_64 | 3.1-0 | 6.00 | 232.00 | 238.00 | NOTE | |
| r-patched-linux-x86_64 | 3.1-0 | 6.54 | 206.13 | 212.67 | NOTE | |
| r-release-linux-x86_64 | 3.1-0 | 5.55 | 203.68 | 209.23 | NOTE | |
| r-release-macos-arm64 | 3.1-0 | 107.00 | NOTE | |||
| r-release-macos-x86_64 | 3.1-0 | 170.00 | NOTE | |||
| r-release-windows-x86_64 | 3.1-0 | 7.00 | 237.00 | 244.00 | NOTE | |
| r-oldrel-macos-arm64 | 3.1-0 | 139.00 | OK | |||
| r-oldrel-macos-x86_64 | 3.1-0 | 363.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.1-0 | 8.00 | 238.00 | 246.00 | NOTE |
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [16s/19s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [3s/4s] OK
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.1-0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'AER', 'car', 'geepack', 'lme4'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1-0
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘sandwich-OOP.Rnw’
...
> options(prompt = "R> ", continue = "+ ")
> if (!require("AER")) tobit <- glm
Loading required package: AER
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘AER’
> if (!require("MASS")) glm.nb <- glm
Loading required package: MASS
> if (!require("lmtest")) coeftest <- function(object,
+ ...) summary(object)$coefficients
Loading required package: lmtest
Loading required package: zoo
Attaching package: ‘zoo’
The following objects are masked from ‘package:base’:
as.Date, as.Date.numeric
> warn <- if (require("AER") & require("MASS") & require("lmtest")) "" else "{\\\\large\\\\bf\\\\color{Red}\n Not all required packages were availab ..." ... [TRUNCATED]
Loading required package: AER
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘AER’
> par(mar = rep(0, 4))
> plot(0, 0, xlim = c(0, 85), ylim = c(0, 110), type = "n",
+ axes = FALSE, xlab = "", ylab = "")
> lgrey <- grey(0.88)
> dgrey <- grey(0.75)
> rect(45, 90, 70, 110, lwd = 2, col = dgrey)
> rect(20, 40, 40, 60, col = lgrey)
> rect(30, 40, 40, 60, col = dgrey)
> rect(20, 40, 40, 60, lwd = 2)
> rect(5, 0, 20, 20, lwd = 2, col = lgrey)
> rect(22.5, 0, 37.5, 20, lwd = 2, col = lgrey)
> rect(40, 0, 55, 20, lwd = 2, col = lgrey)
> rect(40, 0, 55, 20, lwd = 2, col = lgrey)
> rect(60, 0, 80, 20, col = lgrey)
> rect(70, 0, 80, 20, col = dgrey)
> rect(60, 0, 80, 20, lwd = 2)
> text(57.5, 100, "fitted model object\n(class: foo)")
> text(25, 50, "estfun")
> text(35, 50, "foo")
> text(12.5, 10, "meatHC")
> text(30, 10, "meatHAC")
> text(47.5, 10, "meat")
> text(65, 10, "bread")
> text(75, 10, "foo")
> arrows(57.5, 89, 70, 21, lwd = 1.5, length = 0.15,
+ angle = 20)
> arrows(57.5, 89, 30, 61, lwd = 1.5, length = 0.15,
+ angle = 20)
> arrows(30, 39, 30, 21, lwd = 1.5, length = 0.15, angle = 20)
> arrows(30, 39, 12.5, 21, lwd = 1.5, length = 0.15,
+ angle = 20)
> arrows(30, 39, 47.5, 21, lwd = 1.5, length = 0.15,
+ angle = 20)
> suppressWarnings(RNGversion("3.5.0"))
> set.seed(123)
> x <- rnorm(250)
> y <- rnbinom(250, mu = exp(1 + x), size = 1)
> fm_pois <- glm(y ~ x + I(x^2), family = poisson)
> coeftest(fm_pois)
z test of coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 1.063268 0.041357 25.7094 < 2e-16 ***
x 0.996072 0.053534 18.6062 < 2e-16 ***
I(x^2) -0.049124 0.023146 -2.1223 0.03381 *
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
> coeftest(fm_pois, vcov = sandwich)
When sourcing ‘sandwich-OOP.R’:
Error: object 'sandwich' not found
Execution halted
‘sandwich-CL.Rnw’... [8s/11s] NOTE
differences from ‘sandwich-CL.Rout.save’
26,27d25
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
< there is no package called 'geepack'
40,41d37
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
< there is no package called 'lme4'
86c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
89,91c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
154,155c150,151
< (Intercept) 0.066939 0.066939 0.028359
< x 0.050540 0.050540 0.028583
---
> (Intercept) 0.066939 0.066939 0.066939
> x 0.050540 0.050540 0.050540
‘sandwich-OOP.Rnw’... failed
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1-0
Check: re-building of vignette outputs
Result: NOTE
Note: skipping ‘sandwich-CL.Rnw’ due to unavailable dependencies: 'geepack'
Note: skipping ‘sandwich-OOP.Rnw’ due to unavailable dependencies: 'AER'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [20s/27s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... OK
‘sandwich.Rnw’... OK
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [18s/22s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... OK
‘sandwich.Rnw’... OK
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
'sandwich-CL.Rnw'... [11s] NOTE
differences from 'sandwich-CL.Rout.save'
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
'sandwich-OOP.Rnw'... [2s] OK
'sandwich.Rnw'... [1s] OK
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [14s/19s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [3s/3s] OK
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-patched-linux-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [15s/21s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [3s/3s] OK
‘sandwich.Rnw’... [1s/2s] OK
Flavor: r-release-linux-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [5s/6s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [1s/1s] OK
‘sandwich.Rnw’... [1s/1s] OK
Flavor: r-release-macos-arm64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
‘sandwich-CL.Rnw’... [10s/12s] NOTE
differences from ‘sandwich-CL.Rout.save’
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
‘sandwich-OOP.Rnw’... [2s/2s] OK
‘sandwich.Rnw’... [1s/1s] OK
Flavor: r-release-macos-x86_64
Version: 3.1-0
Check: running R code from vignettes
Result: NOTE
'sandwich-CL.Rnw'... [13s] NOTE
differences from 'sandwich-CL.Rout.save'
82c82
< Classes and Methods for R originally developed in the
---
> Classes and Methods for R developed in the
85,87c85,87
< Stanford University (2002-2015),
< by and under the direction of Simon Jackman.
< hurdle and zeroinfl functions by Achim Zeileis.
---
> Stanford University
> Simon Jackman
> hurdle and zeroinfl functions by Achim Zeileis
'sandwich-OOP.Rnw'... [3s] OK
'sandwich.Rnw'... [1s] OK
Flavor: r-oldrel-windows-x86_64