Last updated on 2025-12-06 00:48:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 5.42 | 152.17 | 157.59 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 3.38 | 65.85 | 69.23 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 10.00 | 230.44 | 240.44 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 11.00 | 232.76 | 243.76 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 8.00 | 192.00 | 200.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 6.22 | 138.84 | 145.06 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 3.82 | 141.11 | 144.93 | OK | |
| r-release-macos-arm64 | 1.0.1 | OK | ||||
| r-release-macos-x86_64 | 1.0.1 | 5.00 | 168.00 | 173.00 | OK | |
| r-release-windows-x86_64 | 1.0.1 | 8.00 | 180.00 | 188.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.1 | 5.00 | 113.00 | 118.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.1 | 9.00 | 199.00 | 208.00 | OK |
Version: 1.0.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'reshape2', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘phylosamp-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gendist_roc_format
> ### Title: Make ROC curve from sensitivity and specificity
> ### Aliases: gendist_roc_format
>
> ### ** Examples
>
> # ebola-like pathogen
> R <- 1.5
> mut_rate <- 1
>
> # use simulated generation distributions
> data('genDistSim')
> mean_gens_pdf <- as.numeric(genDistSim[genDistSim$R == R, -(1:2)])
>
> # get theoretical genetic distance dist based on mutation rate and generation parameters
> dists <- as.data.frame(gendist_distribution(mut_rate = mut_rate,
+ mean_gens_pdf = mean_gens_pdf,
+ max_link_gens = 1))
>
> dists <- reshape2::melt(dists,
+ id.vars = 'dist',
+ variable.name = 'status',
+ value.name = 'prob')
Error in loadNamespace(x) : there is no package called ‘reshape2’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: HTML version of manual
Result: NOTE
Skipping checking math rendering: package 'V8' unavailable
Flavor: r-devel-linux-x86_64-debian-gcc