Last updated on 2025-12-06 00:48:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 1.93 | 44.31 | 46.24 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 1.58 | 20.56 | 22.14 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 68.43 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 77.55 | OK | |||
| r-devel-windows-x86_64 | 0.0.1 | 3.00 | 63.00 | 66.00 | OK | |
| r-patched-linux-x86_64 | 0.0.1 | 2.21 | 39.28 | 41.49 | OK | |
| r-release-linux-x86_64 | 0.0.1 | 1.84 | 41.62 | 43.46 | OK | |
| r-release-macos-arm64 | 0.0.1 | OK | ||||
| r-release-macos-x86_64 | 0.0.1 | 2.00 | 53.00 | 55.00 | OK | |
| r-release-windows-x86_64 | 0.0.1 | 3.00 | 63.00 | 66.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.0.1 | 2.00 | 61.00 | 63.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.1 | 3.00 | 72.00 | 75.00 | OK |
Version: 0.0.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'outbreaker2', 'mixtree', 'epicontacts',
'ggraph'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘o2ools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_accuracy
> ### Title: Calculate the accuracy of outbreak reconstruction
> ### Aliases: get_accuracy
>
> ### ** Examples
>
> true_tree <- data.frame(from = as.character(outbreaker2::fake_outbreak$ances), to = linelist$id)
Error in loadNamespace(x) : there is no package called ‘outbreaker2’
Calls: data.frame ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: HTML version of manual
Result: NOTE
Skipping checking math rendering: package 'V8' unavailable
Flavor: r-devel-linux-x86_64-debian-gcc