CRAN Package Check Results for Maintainer ‘Marc A. Suchard <msuchard at ucla.edu>’

Last updated on 2025-10-21 00:50:48 CEST.

Package	NOTE	OK
BeastJar	3	10
BrokenAdaptiveRidge		13
Cyclops	3	10
IterativeHardThresholding		13
MultiBD	13
RcppXsimd	13

Package BeastJar

Current CRAN status: NOTE: 3, OK: 10

Version: 10.5.1
Check: installed package size
Result: NOTE installed size is 8.6Mb sub-directories of 1Mb or more: java 8.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package BrokenAdaptiveRidge

Current CRAN status: OK: 13

Package Cyclops

Current CRAN status: NOTE: 3, OK: 10

Version: 3.6.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: finalizeSqlCyclopsData.html:76:1 (finalizeSqlCyclopsData.Rd:30): Warning: missing </ul> before </div> fitCyclopsSimulation.html:75:1 (fitCyclopsSimulation.Rd:27): Warning: missing </ul> before </div> getCovariateIds.html:46:1 (getCovariateIds.Rd:10): Warning: missing </ul> before </div> getCovariateTypes.html:50:1 (getCovariateTypes.Rd:12): Warning: missing </ul> before </div> getCrossValidationInfo.html:46:1 (getCrossValidationInfo.Rd:10): Warning: missing </ul> before </div> getFloatingPointSize.html:46:1 (getFloatingPointSize.Rd:10): Warning: missing </ul> before </div> getNumberOfCovariates.html:46:1 (getNumberOfCovariates.Rd:10): Warning: missing </ul> before </div> getNumberOfRows.html:46:1 (getNumberOfRows.Rd:10): Warning: missing </ul> before </div> getNumberOfStrata.html:46:1 (getNumberOfStrata.Rd:10): Warning: missing </ul> before </div> getNumberOfTypes.html:46:1 (getNumberOfTypes.Rd:10): Warning: missing </ul> before </div> gradient.html:47:1 (gradient.Rd:10): Warning: missing </ul> before </div> isInitialized.html:48:1 (isInitialized.Rd:10): Warning: missing </ul> before </div> meanLinearPredictor.html:46:1 (meanLinearPredictor.Rd:10): Warning: missing </ul> before </div> plotCyclopsSimulationFit.html:55:1 (plotCyclopsSimulationFit.Rd:14): Warning: missing </ul> before </div> predict.cyclopsFit.html:59:1 (predict.cyclopsFit.Rd:16): Warning: missing </ul> before </div> print.cyclopsData.html:55:1 (print.cyclopsData.Rd:14): Warning: missing </ul> before </div> print.cyclopsFit.html:55:1 (print.cyclopsFit.Rd:14): Warning: missing </ul> before </div> printMatrixMarket.html:50:1 (printMatrixMarket.Rd:12): Warning: missing </ul> before </div> residuals.cyclopsFit.html:61:1 (residuals.cyclopsFit.Rd:18): Warning: missing </ul> before </div> runBootstrap.html:58:1 (runBootstrap.Rd:16): Warning: missing </ul> before </div> setOpenCLDevice.html:46:1 (setOpenCLDevice.Rd:10): Warning: missing </ul> before </div> testProportionality.html:56:1 (testProportionality.Rd:15): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.6.0
Check: installed package size
Result: NOTE installed size is 29.1Mb sub-directories of 1Mb or more: libs 28.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package IterativeHardThresholding

Current CRAN status: OK: 13

Package MultiBD

Current CRAN status: NOTE: 13

Additional issues

Intel

Version: 0.2.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Marc A. Suchard <msuchard@ucla.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = c("Lam", "S.T."), family = "Ho", role = c("aut", "cre")), person(given = c("Marc", "A."), family = "Suchard", role = c("aut", "cre"), email = "msuchard@ucla.edu"), person(given = c("Forrest", "W."), family = "Crawford", role = "aut"), person(given = "Jason", family = "Xu", role = "ctb"), person(given = c("Vladimir", "N."), family = "Minin", role = "ctb")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.0
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: compiled code
Result: NOTE File ‘MultiBD/libs/MultiBD.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: installed package size
Result: NOTE installed size is 6.1Mb sub-directories of 1Mb or more: libs 4.5Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package RcppXsimd

Current CRAN status: NOTE: 13

Version: 7.1.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Marc A. Suchard <msuchard@ucla.edu>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 7.1.6
Check: C++ specification
Result: NOTE Specified C++14: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64