Last updated on 2025-12-06 00:48:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.3.1 | 3.88 | 144.86 | 148.74 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.3.1 | 2.75 | 56.02 | 58.77 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.3.1 | 240.00 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.3.1 | 10.00 | 221.79 | 231.79 | OK | |
| r-devel-windows-x86_64 | 0.2.3.1 | 6.00 | 143.00 | 149.00 | OK | |
| r-patched-linux-x86_64 | 0.2.3.1 | 4.30 | 139.16 | 143.46 | OK | |
| r-release-linux-x86_64 | 0.2.3.1 | 4.30 | 140.97 | 145.27 | OK | |
| r-release-macos-arm64 | 0.2.3.1 | OK | ||||
| r-release-macos-x86_64 | 0.2.3.1 | 3.00 | 145.00 | 148.00 | OK | |
| r-release-windows-x86_64 | 0.2.3.1 | 5.00 | 144.00 | 149.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.3.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.3.1 | 6.00 | 145.00 | 151.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.3.1 | 7.00 | 193.00 | 200.00 | OK |
Version: 0.2.3.1
Check: tests
Result: ERROR
Running ‘andersondarling_behaviour.r’ [0s/0s]
Running ‘andersondarling_correctness.r’ [1s/1s]
Running ‘andersondarling_errors.r’ [0s/0s]
Running ‘andersondarling_warnings.r’ [0s/0s]
Running ‘bartlett_behaviour.r’ [0s/0s]
Running ‘bartlett_correctness.r’ [2s/2s]
Running ‘bartlett_errors.r’ [0s/0s]
Running ‘bartlett_warnings.r’ [0s/0s]
Running ‘brownforsythe_behaviour.r’ [0s/0s]
Running ‘brownforsythe_correctness.r’ [0s/0s]
Running ‘brownforsythe_errors.r’ [0s/0s]
Running ‘brownforsythe_warnings.r’ [0s/0s]
Running ‘cor_pearson_behaviour.r’ [0s/0s]
Running ‘cor_pearson_correctness.r’ [1s/1s]
Running ‘cor_pearson_errors.r’ [0s/0s]
Running ‘cor_pearson_warnings.r’ [0s/0s]
Running ‘cosinor_behaviour.r’ [0s/0s]
Running ‘cosinor_correctness.r’ [0s/0s]
Running ‘cosinor_errors.r’ [0s/0s]
Running ‘cosinor_warnings.r’ [0s/0s]
Running ‘f_var_behaviour.r’ [0s/0s]
Running ‘f_var_correctness.r’ [1s/1s]
Running ‘f_var_errors.r’ [0s/0s]
Running ‘f_var_warnings.r’ [0s/0s]
Running ‘flignerkilleen_behaviour.r’ [0s/0s]
Running ‘flignerkilleen_correctness.r’ [2s/2s]
Running ‘flignerkilleen_errors.r’ [0s/0s]
Running ‘flignerkilleen_warnings.r’ [0s/0s]
Running ‘jarquebera_behaviour.r’ [0s/0s]
Running ‘jarquebera_correctness.r’ [1s/1s]
Running ‘jarquebera_errors.r’ [0s/0s]
Running ‘jarquebera_warnings.r’ [0s/0s]
Running ‘kolmogorovsmirnov_twosample_behavioiur.r’ [0s/0s]
Running ‘kolmogorovsmirnov_twosample_correctness.r’ [4s/4s]
Running ‘kolmogorovsmirnov_twosample_errors.r’ [0s/0s]
Running ‘kolmogorovsmirnov_twosample_warnings.r’ [0s/0s]
Running ‘kruskalwallis_behaviour.r’ [0s/0s]
Running ‘kruskalwallis_correctness.r’ [2s/2s]
Running ‘kruskalwallis_errors.r’ [0s/0s]
Running ‘kruskalwallis_warnings.r’ [0s/0s]
Running ‘levene_behaviour.r’ [0s/0s]
Running ‘levene_correctness.r’ [0s/0s]
Running ‘levene_errors.r’ [0s/0s]
Running ‘levene_warnings.r’ [0s/0s]
Running ‘oneway_equalvar_behaviour.r’ [0s/0s]
Running ‘oneway_equalvar_correctness.r’ [3s/3s]
Running ‘oneway_equalvar_errors.r’ [0s/0s]
Running ‘oneway_equalvar_warnings.r’ [0s/0s]
Running ‘oneway_welch_behaviour.r’ [0s/0s]
Running ‘oneway_welch_correctness.r’ [2s/2s]
Running ‘oneway_welch_errors.r’ [0s/0s]
Running ‘oneway_welch_warnings.r’ [0s/0s]
Running ‘t_equalvar_behaviour.r’ [0s/0s]
Running ‘t_equalvar_correctness.r’ [1s/1s]
Running ‘t_equalvar_errors.r’ [0s/0s]
Running ‘t_equalvar_warnings.r’ [0s/0s]
Running ‘t_onesample_behaviour.r’ [0s/0s]
Running ‘t_onesample_correctness.r’ [1s/1s]
Running ‘t_onesample_errors.r’ [0s/0s]
Running ‘t_onesample_warnings.r’ [0s/0s]
Running ‘t_paired_behaviour.r’ [0s/0s]
Running ‘t_paired_correctness.r’ [1s/1s]
Running ‘t_paired_errors.r’ [0s/0s]
Running ‘t_paired_warnings.r’ [0s/0s]
Running ‘t_welch_behaviour.r’ [0s/0s]
Running ‘t_welch_correctness.r’ [1s/1s]
Running ‘t_welch_errors.r’ [0s/0s]
Running ‘t_welch_warnings.r’ [0s/0s]
Running ‘waerden_behaviour.r’ [0s/0s]
Running ‘waerden_correctness.r’ [0s/0s]
Running ‘waerden_errors.r’ [0s/0s]
Running ‘waerden_warnings.r’ [0s/0s]
Running ‘wilcoxon_onesample_behaviour.r’ [0s/0s]
Running ‘wilcoxon_onesample_errors.r’ [0s/0s]
Running ‘wilcoxon_onesample_warnings.r’ [0s/0s]
Running ‘wilcoxon_paired_behaviour.r’ [0s/0s]
Running ‘wilcoxon_paired_errors.r’ [0s/0s]
Running ‘wilcoxon_paired_warnings.r’ [0s/0s]
Running ‘wilcoxon_twosample_behaviour.r’ [0s/0s]
Running ‘wilcoxon_twosample_errors.r’ [0s/0s]
Running ‘wilcoxon_twosample_warnings.r’ [0s/0s]
Running the tests in ‘tests/brownforsythe_correctness.r’ failed.
Complete output:
> library(matrixTests)
>
> #--- functions -----------------------------------------------------------------
>
> car_brownforsythe <- function(mat, groups) {
+ if(is.vector(mat)) mat <- matrix(mat, nrow=1)
+
+ bad <- is.na(groups)
+ mat <- mat[,!bad,drop=FALSE]
+ groups <- groups[!bad]
+
+ ot <- og <- dft <- dfr <- fst <- p <- numeric(nrow(mat))
+ for(i in 1:nrow(mat)) {
+ bad <- is.na(mat[i,])
+ vec <- mat[i,!bad]
+ grp <- factor(groups[!bad])
+
+ res <- car::leveneTest(vec ~ grp, center="median")
+
+ # if p-value is NA turn dfs to NA as well
+ if(is.na(res[["Pr(>F)"]][1])) res[["Df"]] <- NA
+
+ dft[i] <- res[["Df"]][1]
+ dfr[i] <- res[["Df"]][2]
+ fst[i] <- res[["F value"]][1]
+ p[i] <- res[["Pr(>F)"]][1]
+ ot[i] <- length(vec)
+ og[i] <- length(unique(grp))
+ }
+
+ data.frame(obs.tot=ot, obs.groups=og, df.between=dft, df.within=dfr,
+ statistic=fst, pvalue=p
+ )
+ }
>
>
> #--- montecarlo ----------------------------------------------------------------
>
> # two groups
> x <- matrix(rnorm(10000), ncol=10)
> g <- sample(letters[1:2], 6, replace=TRUE)
> g <- sample(c("a", "a", "b", "b", g)) # ensure both groups have at least 2 obs
> res1 <- car_brownforsythe(x, g)
Error in loadNamespace(x) : there is no package called 'car'
Calls: car_brownforsythe ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running the tests in ‘tests/cosinor_correctness.r’ failed.
Complete output:
> library(matrixTests)
>
> #--- functions -----------------------------------------------------------------
>
> cosinor_cosinor <- function(mat, time, per) {
+ stopifnot(ncol(mat) == length(time))
+ if(is.vector(mat)) mat <- matrix(mat, nrow=1)
+ n <- m <- amp <- acr <- dfm <- dfr <- rsq <- f <- p <- numeric(nrow(mat))
+
+ for(i in 1:nrow(mat)) {
+ dat <- data.frame(x=mat[i,], t=time)
+ dat <- dat[!is.na(dat$x) & !is.na(dat$t),]
+ res <- cosinor::cosinor.lm(x ~ time(t), data=dat, period=per)
+
+ n[i] <- nrow(dat)
+ m[i] <- res$coefficients[1]
+ amp[i] <- res$coefficients[2]
+ acr[i] <- abs(cosinor2::correct.acrophase(res) / pi * (per/2))
+ dfm[i] <- cosinor2::cosinor.detect(res)[2]
+ dfr[i] <- cosinor2::cosinor.detect(res)[3]
+ rsq[i] <- cosinor2::cosinor.PR(res)[[2]]
+ f[i] <- cosinor2::cosinor.detect(res)[1]
+ p[i] <- cosinor2::cosinor.detect(res)[4]
+ }
+
+ data.frame(obs=n, mesor=m, amplitude=amp, acrophase=acr, rsquared=rsq,
+ df.model=dfm, df.residual=dfr, statistic=f,
+ pvalue=p, period=per
+ )
+ }
>
>
> #--- montecarlo ----------------------------------------------------------------
>
> # equally spaced 10 time points, period = 10
> X <- matrix(rnorm(10000), ncol=10)
> t <- -5:4
> res1 <- cosinor_cosinor(X, t, 10)
Error in loadNamespace(x) : there is no package called 'cosinor'
Calls: cosinor_cosinor ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running the tests in ‘tests/levene_correctness.r’ failed.
Complete output:
> library(matrixTests)
>
> #--- functions -----------------------------------------------------------------
>
> car_levene <- function(mat, groups) {
+ if(is.vector(mat)) mat <- matrix(mat, nrow=1)
+
+ bad <- is.na(groups)
+ mat <- mat[,!bad,drop=FALSE]
+ groups <- groups[!bad]
+
+ ot <- og <- dft <- dfr <- fst <- p <- numeric(nrow(mat))
+ for(i in 1:nrow(mat)) {
+ bad <- is.na(mat[i,])
+ vec <- mat[i,!bad]
+ grp <- factor(groups[!bad])
+
+ res <- car::leveneTest(vec ~ grp, center="mean")
+
+ # if p-vallue is NA turn df to NA as well
+ if(is.na(res[["Pr(>F)"]][1])) res[["Df"]] <- NA
+
+ dft[i] <- res[["Df"]][1]
+ dfr[i] <- res[["Df"]][2]
+ fst[i] <- res[["F value"]][1]
+ p[i] <- res[["Pr(>F)"]][1]
+ ot[i] <- length(vec)
+ og[i] <- length(unique(grp))
+ }
+
+ data.frame(obs.tot=ot, obs.groups=og, df.between=dft, df.within=dfr,
+ statistic=fst, pvalue=p
+ )
+ }
>
>
> #--- montecarlo ----------------------------------------------------------------
>
> # two groups
> x <- matrix(rnorm(10000), ncol=10)
> g <- sample(letters[1:2], 6, replace=TRUE)
> g <- sample(c("a", "a", "b", "b", g)) # ensure both groups have at least 2 obs
> res1 <- car_levene(x, factor(g))
Error in loadNamespace(x) : there is no package called 'car'
Calls: car_levene ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Running the tests in ‘tests/waerden_correctness.r’ failed.
Complete output:
> library(matrixTests)
>
> #--- functions -----------------------------------------------------------------
>
> pmcmr_waerden <- function(mat, groups) {
+ if(is.vector(mat)) mat <- matrix(mat, nrow=1)
+
+ bad <- is.na(groups)
+ mat <- mat[,!bad,drop=FALSE]
+ groups <- groups[!bad]
+
+ ot <- og <- df <- stat <- p <- numeric(nrow(mat))
+ for(i in 1:nrow(mat)) {
+ bad <- is.na(mat[i,])
+ vec <- mat[i,!bad]
+ grp <- factor(groups[!bad])
+ res <- PMCMRplus::vanWaerdenTest(vec, grp)
+
+ # if p-value is NA turn df to NA as well
+ if(is.na(res$p.value)) res$parameter <- NA
+
+ df[i] <- res$parameter
+ stat[i] <- res$statistic
+ p[i] <- res$p.value
+ ot[i] <- length(vec)
+ og[i] <- length(unique(grp))
+ }
+
+ data.frame(obs.tot=ot, obs.groups=og, df=df, statistic=stat, pvalue=p)
+ }
>
> #--- montecarlo ----------------------------------------------------------------
>
> # two groups
> x <- matrix(rnorm(10000), ncol=10)
> g <- sample(letters[1:2], 6, replace=TRUE)
> g <- sample(c("a", "a", "b", "b", g)) # ensure both groups have at least 2 obs
> res1 <- pmcmr_waerden(x, g)
Error in loadNamespace(x) : there is no package called 'PMCMRplus'
Calls: pmcmr_waerden ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc