Last updated on 2025-10-21 00:50:46 CEST.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| CohortCharacteristics | 1 | 10 | 1 | 1 |
| DrugUtilisation | 1 | 12 | ||
| OmopConstructor | 13 | |||
| omopgenerics | 1 | 1 | 11 | |
| OmopViewer | 1 | 1 | 11 | |
| PatientProfiles | 1 | 1 | 11 |
Current CRAN status: ERROR: 1, WARN: 10, NOTE: 1, OK: 1
Version: 1.0.1
Check: for code/documentation mismatches
Result: WARN
Codoc mismatches from Rd file 'mockCohortCharacteristics.Rd':
mockCohortCharacteristics
Code: function(numberIndividuals = 10, ..., source = "local", con =
lifecycle::deprecated(), writeSchema =
lifecycle::deprecated(), seed =
lifecycle::deprecated())
Docs: function(con = NULL, writeSchema = NULL, numberIndividuals =
10, ..., seed = NULL)
Argument names in code not in docs:
source
Mismatches in argument names (first 3):
Position: 1 Code: numberIndividuals Docs: con
Position: 2 Code: ... Docs: writeSchema
Position: 3 Code: source Docs: numberIndividuals
Mismatches in argument default values:
Name: 'con' Code: lifecycle::deprecated() Docs: NULL
Name: 'writeSchema' Code: lifecycle::deprecated() Docs: NULL
Name: 'seed' Code: lifecycle::deprecated() Docs: NULL
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div>
cohortIdDoc.html:41:1 (cohortIdDoc.Rd:8): Warning: missing </ul> before </div>
plotDoc.html:47:1 (plotDoc.Rd:12): Warning: missing </ul> before </div>
resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div>
strataDoc.html:41:1 (strataDoc.Rd:8): Warning: missing </ul> before </div>
tableDoc.html:61:1 (tableDoc.Rd:20): Warning: missing </ul> before </div>
timeScaleDoc.html:40:1 (timeScaleDoc.Rd:7): Warning: missing </ul> before </div>
uniqueCombinationsDoc.html:41:1 (uniqueCombinationsDoc.Rd:8): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 4.0Mb
help 1.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘omopgenerics’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: NOTE: 1, OK: 12
Version: 1.0.4
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
cdmDoc.html:40:1 (cdmDoc.Rd:7): Warning: missing </ul> before </div>
censorDateDoc.html:41:1 (censorDateDoc.Rd:8): Warning: missing </ul> before </div>
cohortDoc.html:40:1 (cohortDoc.Rd:7): Warning: missing </ul> before </div>
cohortIdDoc.html:41:1 (cohortIdDoc.Rd:8): Warning: missing </ul> before </div>
compNameDoc.html:41:1 (compNameDoc.Rd:8): Warning: missing </ul> before </div>
conceptSetDoc.html:40:1 (conceptSetDoc.Rd:7): Warning: missing </ul> before </div>
daysPrescribedDoc.html:41:1 (daysPrescribedDoc.Rd:8): Warning: missing </ul> before </div>
drugUtilisationDoc.html:94:1 (drugUtilisationDoc.Rd:40): Warning: missing </ul> before </div>
gapEraDoc.html:41:1 (gapEraDoc.Rd:8): Warning: missing </ul> before </div>
indexDateDoc.html:41:1 (indexDateDoc.Rd:8): Warning: missing </ul> before </div>
ingredientConceptIdDoc.html:41:1 (ingredientConceptIdDoc.Rd:8): Warning: missing </ul> before </div>
nameStyleDoc.html:40:1 (nameStyleDoc.Rd:7): Warning: missing </ul> before </div>
newNameDoc.html:41:1 (newNameDoc.Rd:8): Warning: missing </ul> before </div>
numberExposuresDoc.html:41:1 (numberExposuresDoc.Rd:8): Warning: missing </ul> before </div>
plotDoc.html:47:1 (plotDoc.Rd:12): Warning: missing </ul> before </div>
restrictIncidentDoc.html:42:1 (restrictIncidentDoc.Rd:9): Warning: missing </ul> before </div>
resultDoc.html:40:1 (resultDoc.Rd:7): Warning: missing </ul> before </div>
strataDoc.html:41:1 (strataDoc.Rd:8): Warning: missing </ul> before </div>
tableDoc.html:62:1 (tableDoc.Rd:21): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 1.3.2
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
assertCharacter.html:89:1 (assertCharacter.Rd:37): Warning: missing </ul> before </div>
assertChoice.html:88:1 (assertChoice.Rd:36): Warning: missing </ul> before </div>
assertClass.html:84:1 (assertClass.Rd:34): Warning: missing </ul> before </div>
assertList.html:88:1 (assertList.Rd:36): Warning: missing </ul> before </div>
assertLogical.html:78:1 (assertLogical.Rd:30): Warning: missing </ul> before </div>
assertNumeric.html:98:1 (assertNumeric.Rd:42): Warning: missing </ul> before </div>
assertTable.html:94:1 (assertTable.Rd:40): Warning: missing </ul> before </div>
assertTrue.html:58:1 (assertTrue.Rd:16): Warning: missing </ul> before </div>
exportSummarisedResult.html:81:1 (exportSummarisedResult.Rd:33): Warning: missing </ul> before </div>
validateNameLevel.html:69:1 (validateNameLevel.Rd:25): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘dbplyr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.4.0
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
omopViewerPanels.html:48:1 (omopViewerPanels.Rd:11): Warning: missing </ul> before </div>
omopViewerResults.html:48:1 (omopViewerResults.Rd:11): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(OmopViewer)
>
> test_check("OmopViewer")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 68 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test-packagesSupported.R:2:3', 'test-appStatic.R:33:3',
'test-appStatic.R:45:3', 'test-appStatic.R:64:3', 'test-appStatic.R:71:3'
• manual test (1): 'test-functions.R:3:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-appStatic.R:5:3'): logo ──────────────────────────────────────
Expected `exportStaticApp(...)` to run without any errors.
i Actually got a <purrr_error_indexed> with text:
i In index: 1.
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 68 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 1.4.3
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mockDisconnect.html:46:1 (mockDisconnect.Rd:10): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘omopgenerics’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64