Last updated on 2024-06-14 00:53:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0-2 | 12.16 | 150.35 | 162.51 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.0-2 | 8.84 | 88.95 | 97.79 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0-2 | 205.99 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0-2 | 202.90 | NOTE | |||
| r-devel-windows-x86_64 | 0.0-2 | 10.00 | 122.00 | 132.00 | NOTE | |
| r-patched-linux-x86_64 | 0.0-2 | 7.92 | 143.46 | 151.38 | NOTE | |
| r-release-linux-x86_64 | 0.0-2 | 10.73 | 145.07 | 155.80 | NOTE | |
| r-release-macos-arm64 | 0.0-2 | 59.00 | NOTE | |||
| r-release-macos-x86_64 | 0.0-2 | 136.00 | NOTE | |||
| r-release-windows-x86_64 | 0.0-2 | 10.00 | 123.00 | 133.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.0-2 | 63.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.0-2 | 109.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.0-2 | 13.00 | 144.00 | 157.00 | OK |
Version: 0.0-2
Check: Rd files
Result: NOTE
checkRd: (-1) locate_shift.Rd:29: Lost braces
29 | \code{\link{quickfit}}, code{\link{locator}}
| ^
checkRd: (-1) marcher-package.Rd:14: Lost braces; missing escapes or markup?
14 | 1. \code{\link{estimate_shift}} {Estimate a range shift process.}
| ^
checkRd: (-1) marcher-package.Rd:16: Lost braces; missing escapes or markup?
16 | 2. \code{\link{simulate_shift}} {Simulate a range shift process.}
| ^
checkRd: (-1) marcher-package.Rd:18: Lost braces; missing escapes or markup?
18 | 3. \code{\link{plot.shiftfit}} {Visualize a range shift process.}
| ^
checkRd: (-1) marcher-package.Rd:20: Lost braces; missing escapes or markup?
20 | 4. \code{\link{test_rangeshift}} {Test whether a range shift occurred.}
| ^
checkRd: (-1) marcher-package.Rd:22: Lost braces; missing escapes or markup?
22 | 5. \code{\link{test_return}} {Test whether a migration was a return migration.}
| ^
checkRd: (-1) marcher-package.Rd:24: Lost braces; missing escapes or markup?
24 | 6. \code{\link{test_stopover}} {Test whether a stopover occurred during a migration.}
| ^
checkRd: (-1) quickfit.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) quickfit.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) test_rangeshift.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.0-2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘lubridate’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0-2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘marcher.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/MeanPlot-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6663 bytes
Input file size = 7521 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5691
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5691
Output IDAT size = 5691 bytes (972 bytes decrease)
Output file size = 5769 bytes (1752 bytes = 23.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/FirstSimTrack-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 18780 bytes
Input file size = 19662 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17189
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17014
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 17014
Output IDAT size = 17014 bytes (1766 bytes decrease)
Output file size = 17092 bytes (2570 bytes = 13.07% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/SimulatedTracks-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 16314 bytes
Input file size = 17184 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15160
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 15066
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 15066
Output IDAT size = 15066 bytes (1248 bytes decrease)
Output file size = 15144 bytes (2040 bytes = 11.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/SimulatedTracks-2.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13025 bytes
Input file size = 13895 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11919
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11891
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11891
Output IDAT size = 11891 bytes (1134 bytes decrease)
Output file size = 11969 bytes (1926 bytes = 13.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/SimulatedTracks-3.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13183 bytes
Input file size = 14053 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12089
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12054
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 12054
Output IDAT size = 12054 bytes (1129 bytes decrease)
Output file size = 12132 bytes (1921 bytes = 13.67% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/unnamed-chunk-7-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11837 bytes
Input file size = 12707 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10756
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10704
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10704
Output IDAT size = 10704 bytes (1133 bytes decrease)
Output file size = 10782 bytes (1925 bytes = 15.15% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/unnamed-chunk-8-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 17289 bytes
Input file size = 18171 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16125
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16063
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 16063
Output IDAT size = 16063 bytes (1226 bytes decrease)
Output file size = 16141 bytes (2030 bytes = 11.17% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/PlotFit1-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 45445 bytes
Input file size = 45583 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36887
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36887
Output IDAT size = 36887 bytes (8558 bytes decrease)
Output file size = 36965 bytes (8618 bytes = 18.91% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/ThreeRangeFit-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 48374 bytes
Input file size = 48512 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39337
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39337
Output IDAT size = 39337 bytes (9037 bytes decrease)
Output file size = 39415 bytes (9097 bytes = 18.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/quickfit1-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17434 bytes
Input file size = 17536 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14736
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14736
Output IDAT size = 14736 bytes (2698 bytes decrease)
Output file size = 14814 bytes (2722 bytes = 15.52% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/quickfit2-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24211 bytes
Input file size = 24313 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20779
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20779
Output IDAT size = 20779 bytes (3432 bytes decrease)
Output file size = 20857 bytes (3456 bytes = 14.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/ThreeResidualFits-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21023 bytes
Input file size = 21905 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19638
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19638
Output IDAT size = 19638 bytes (1385 bytes decrease)
Output file size = 19716 bytes (2189 bytes = 9.99% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/marcher.Rcheck/vign_test/marcher/vignettes/marcher_files/figure-html/Michela-1.png
576x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 13164 bytes
Input file size = 14034 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11998
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11944
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 11944
Output IDAT size = 11944 bytes (1220 bytes decrease)
Output file size = 12022 bytes (2012 bytes = 14.34% decrease)
Quitting from lines 289-293 [unnamed-chunk-11] (marcher.Rmd)
Error: processing vignette 'marcher.Rmd' failed with diagnostics:
there is no package called 'lubridate'
--- failed re-building ‘marcher.Rmd’
SUMMARY: processing the following file failed:
‘marcher.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc