CRAN Package Check Results for Maintainer Amanda Mejia <mandy.mejia at gmail.com>

CRAN Package Check Results for Maintainer ‘Amanda Mejia <mandy.mejia at gmail.com>’

Last updated on 2025-10-21 00:50:46 CEST.

Package	NOTE	OK
BayesBrainMap	3	10
BayesfMRI	3	10
ciftiTools	4	9
fMRIscrub	1	12
fMRItools	1	12
hrf	1	12
templateICAr	3	10

Package BayesBrainMap

Current CRAN status: NOTE: 3, OK: 10

Version: 0.1.3
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: Chol_samp_fun.html:66:1 (Chol_samp_fun.Rd:20): Warning: missing </ul> before </div> GSR_Param.html:42:1 (GSR_Param.Rd:9): Warning: missing </ul> before </div> TR_param.html:41:1 (TR_param.Rd:8): Warning: missing </ul> before </div> estimate_prior_FC.html:51:1 (estimate_prior_FC.Rd:13): Warning: missing </ul> before </div> format_engagement_name.html:51:1 (format_engagement_name.Rd:13): Warning: missing </ul> before </div> hpf_param.html:49:1 (hpf_param.Rd:16): Warning: missing </ul> before </div> removebs_prior.html:50:1 (removebs_prior.Rd:12): Warning: missing </ul> before </div> scale_Param.html:43:1 (scale_Param.Rd:10): Warning: missing </ul> before </div> struct_prior.html:69:1 (struct_prior.Rd:25): Warning: missing </ul> before </div> varTol_Param.html:44:1 (varTol_Param.Rd:11): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package BayesfMRI

Current CRAN status: NOTE: 3, OK: 10

Version: 0.10.1
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: BOLD_Param_BayesGLM.html:48:1 (BOLD_Param_BayesGLM.Rd:15): Warning: missing </ul> before </div> BayesGLM_is_valid_one_design.html:46:1 (BayesGLM_is_valid_one_design.Rd:10): Warning: missing </ul> before </div> BayesGLM_is_valid_one_nuisance.html:46:1 (BayesGLM_is_valid_one_nuisance.Rd:10): Warning: missing </ul> before </div> BayesGLM_is_valid_one_scrub.html:46:1 (BayesGLM_is_valid_one_scrub.Rd:10): Warning: missing </ul> before </div> Bayes_Param.html:42:1 (Bayes_Param.Rd:9): Warning: missing </ul> before </div> EM_Param.html:41:1 (EM_Param.Rd:8): Warning: missing </ul> before </div> TR_Param_BayesGLM.html:40:1 (TR_Param_BayesGLM.Rd:7): Warning: missing </ul> before </div> aic_Param.html:42:1 (aic_Param.Rd:9): Warning: missing </ul> before </div> ar_order_Param.html:44:1 (ar_order_Param.Rd:11): Warning: missing </ul> before </div> ar_smooth_Param.html:44:1 (ar_smooth_Param.Rd:11): Warning: missing </ul> before </div> brainstructures_Param_BayesGLM.html:43:1 (brainstructures_Param_BayesGLM.Rd:10): Warning: missing </ul> before </div> buffer_Param.html:43:1 (buffer_Param.Rd:10): Warning: missing </ul> before </div> contrasts_Param.html:40:1 (contrasts_Param.Rd:7): Warning: missing </ul> before </div> design_Param_BayesGLM.html:43:1 (design_Param_BayesGLM.Rd:10): Warning: missing </ul> before </div> dot-findTheta.html:83:1 (dot-findTheta.Rd:29): Warning: missing </ul> before </div> dot-getSqrtInvCpp.html:54:1 (dot-getSqrtInvCpp.Rd:14): Warning: missing </ul> before </div> dot-initialKP.html:67:1 (dot-initialKP.Rd:21): Warning: missing </ul> before </div> dot-logDetQt.html:54:1 (dot-logDetQt.Rd:14): Warning: missing </ul> before </div> emTol_Param.html:41:1 (emTol_Param.Rd:8): Warning: missing </ul> before </div> faces_Param.html:42:1 (faces_Param.Rd:9): Warning: missing </ul> before </div> field_names_Param.html:40:1 (field_names_Param.Rd:7): Warning: missing </ul> before </div> hpf_Param_BayesGLM.html:50:1 (hpf_Param_BayesGLM.Rd:17): Warning: missing </ul> before </div> log_kappa_tau.html:46:1 (log_kappa_tau.Rd:10): Warning: missing </ul> before </div> mask_Param_vertices.html:41:1 (mask_Param_vertices.Rd:8): Warning: missing </ul> before </div> max_threads_Param.html:42:1 (max_threads_Param.Rd:9): Warning: missing </ul> before </div> mean_var_Tol_Param.html:42:1 (mean_var_Tol_Param.Rd:9): Warning: missing </ul> before </div> mesh_Param_either.html:41:1 (mesh_Param_either.Rd:8): Warning: missing </ul> before </div> mesh_Param_inla.html:41:1 (mesh_Param_inla.Rd:8): Warning: missing </ul> before </div> n_threads_Param.html:43:1 (n_threads_Param.Rd:10): Warning: missing </ul> before </div> nbhd_order_Param.html:44:1 (nbhd_order_Param.Rd:11): Warning: missing </ul> before </div> nuisance_Param_BayesGLM.html:52:1 (nuisance_Param_BayesGLM.Rd:19): Warning: missing </ul> before </div> resamp_res_Param_BayesGLM.html:46:1 (resamp_res_Param_BayesGLM.Rd:13): Warning: missing </ul> before </div> return_INLA_Param.html:45:1 (return_INLA_Param.Rd:12): Warning: missing </ul> before </div> scale_BOLD_Param.html:50:1 (scale_BOLD_Param.Rd:12): Warning: missing </ul> before </div> scrub_Param_BayesGLM.html:48:1 (scrub_Param_BayesGLM.Rd:15): Warning: missing </ul> before </div> seed_Param.html:40:1 (seed_Param.Rd:7): Warning: missing </ul> before </div> session_names_Param.html:43:1 (session_names_Param.Rd:10): Warning: missing </ul> before </div> surfaces_Param_BayesGLM.html:47:1 (surfaces_Param_BayesGLM.Rd:14): Warning: missing </ul> before </div> trim_INLA_Param.html:42:1 (trim_INLA_Param.Rd:9): Warning: missing </ul> before </div> unmask_Mdat2In.html:58:1 (unmask_Mdat2In.Rd:16): Warning: missing </ul> before </div> verbose_Param.html:42:1 (verbose_Param.Rd:9): Warning: missing </ul> before </div> vertices_Param.html:42:1 (vertices_Param.Rd:9): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.10.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.10.1
Check: installed package size
Result: NOTE installed size is 17.3Mb sub-directories of 1Mb or more: libs 16.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package ciftiTools

Current CRAN status: NOTE: 4, OK: 9

Version: 0.17.4
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: ROI_brainstructures_Param_all.html:45:1 (ROI_brainstructures_Param_all.Rd:12): Warning: missing </ul> before </div> S3_Summary.html:51:1 (S3_Summary.Rd:13): Warning: missing </ul> before </div> area_original_Param.html:50:1 (area_original_Param.Rd:17): Warning: missing </ul> before </div> area_target_Param.html:43:1 (area_target_Param.Rd:10): Warning: missing </ul> before </div> brainstructures_Param_existing.html:47:1 (brainstructures_Param_existing.Rd:14): Warning: missing </ul> before </div> cifti_fname_Param.html:40:1 (cifti_fname_Param.Rd:7): Warning: missing </ul> before </div> crop_vol.html:46:1 (crop_vol.Rd:10): Warning: missing </ul> before </div> faces_Param.html:42:1 (faces_Param.Rd:9): Warning: missing </ul> before </div> idx_Param.html:46:1 (idx_Param.Rd:13): Warning: missing </ul> before </div> mask_Param_vertices.html:41:1 (mask_Param_vertices.Rd:8): Warning: missing </ul> before </div> original_fnames_Param_remapped.html:44:1 (original_fnames_Param_remapped.Rd:11): Warning: missing </ul> before </div> original_fnames_Param_resampled.html:45:1 (original_fnames_Param_resampled.Rd:12): Warning: missing </ul> before </div> plot.surf.html:56:1 (plot.surf.Rd:17): Warning: missing </ul> before </div> plot.xifti.html:52:1 (plot.xifti.Rd:13): Warning: missing </ul> before </div> read_dir_Param_separated.html:44:1 (read_dir_Param_separated.Rd:11): Warning: missing </ul> before </div> resamp_method_Param.html:50:1 (resamp_method_Param.Rd:17): Warning: missing </ul> before </div> resamp_res_Param_optional.html:42:1 (resamp_res_Param_optional.Rd:9): Warning: missing </ul> before </div> resamp_res_Param_required.html:41:1 (resamp_res_Param_required.Rd:8): Warning: missing </ul> before </div> summary.surf.html:62:1 (summary.surf.Rd:21): Warning: missing </ul> before </div> summary.xifti.html:61:1 (summary.xifti.Rd:20): Warning: missing </ul> before </div> surfL_Param_optional.html:43:1 (surfL_Param_optional.Rd:10): Warning: missing </ul> before </div> surfL_fname_Param.html:41:1 (surfL_fname_Param.Rd:8): Warning: missing </ul> before </div> surfL_original_fname_Param.html:41:1 (surfL_original_fname_Param.Rd:8): Warning: missing </ul> before </div> surfL_target_fname_Param.html:41:1 (surfL_target_fname_Param.Rd:8): Warning: missing </ul> before </div> surfR_Param_optional.html:43:1 (surfR_Param_optional.Rd:10): Warning: missing </ul> before </div> surfR_fname_Param.html:41:1 (surfR_fname_Param.Rd:8): Warning: missing </ul> before </div> surfR_original_fname_Param.html:41:1 (surfR_original_fname_Param.Rd:8): Warning: missing </ul> before </div> surfR_target_fname_Param.html:41:1 (surfR_target_fname_Param.Rd:8): Warning: missing </ul> before </div> surface_plot_Params.html:160:1 (surface_plot_Params.Rd:97): Warning: missing </ul> before </div> verbose_Param_FALSE.html:40:1 (verbose_Param_FALSE.Rd:7): Warning: missing </ul> before </div> verbose_Param_TRUE.html:40:1 (verbose_Param_TRUE.Rd:7): Warning: missing </ul> before </div> vertices_Param.html:42:1 (vertices_Param.Rd:9): Warning: missing </ul> before </div> write_dir_Param_generic.html:43:1 (write_dir_Param_generic.Rd:10): Warning: missing </ul> before </div> write_label_table.html:51:1 (write_label_table.Rd:12): Warning: missing </ul> before </div> x_Param_xifti.html:40:1 (x_Param_xifti.Rd:7): Warning: missing </ul> before </div> xifti_Param.html:40:1 (xifti_Param.Rd:7): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.17.4
Check: installed package size
Result: NOTE installed size is 8.2Mb sub-directories of 1Mb or more: R 2.8Mb extdata 4.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package fMRIscrub

Current CRAN status: NOTE: 1, OK: 12

Version: 0.14.5
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: data_CompCor_Params.html:99:1 (data_CompCor_Params.Rd:62): Warning: missing </ul> before </div> noise_Params.html:60:1 (noise_Params.Rd:25): Warning: missing </ul> before </div> pscrub_Params.html:148:1 (pscrub_Params.Rd:93): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Package fMRItools

Current CRAN status: NOTE: 1, OK: 12

Version: 0.6.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: data_CompCor_Params.html:99:1 (data_CompCor_Params.Rd:62): Warning: missing </ul> before </div> despike_3D.interpolate.html:55:1 (despike_3D.interpolate.Rd:15): Warning: missing </ul> before </div> noise_Params.html:60:1 (noise_Params.Rd:25): Warning: missing </ul> before </div> plot_FC.html:110:1 (plot_FC.Rd:54): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Package hrf

Current CRAN status: NOTE: 1, OK: 12

Version: 0.1.3
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: BOLD_Param_BayesGLM.html:48:1 (BOLD_Param_BayesGLM.Rd:15): Warning: missing </ul> before </div> TR_Param_BayesGLM.html:40:1 (TR_Param_BayesGLM.Rd:7): Warning: missing </ul> before </div> aic_Param.html:42:1 (aic_Param.Rd:9): Warning: missing </ul> before </div> ar_order_Param.html:44:1 (ar_order_Param.Rd:11): Warning: missing </ul> before </div> ar_smooth_Param.html:44:1 (ar_smooth_Param.Rd:11): Warning: missing </ul> before </div> brainstructures_Param_BayesGLM.html:43:1 (brainstructures_Param_BayesGLM.Rd:10): Warning: missing </ul> before </div> design_Param_BayesGLM.html:43:1 (design_Param_BayesGLM.Rd:10): Warning: missing </ul> before </div> faces_Param.html:42:1 (faces_Param.Rd:9): Warning: missing </ul> before </div> field_names_Param.html:40:1 (field_names_Param.Rd:7): Warning: missing </ul> before </div> hpf_Param_BayesGLM.html:50:1 (hpf_Param_BayesGLM.Rd:17): Warning: missing </ul> before </div> is_valid_one_design.html:46:1 (is_valid_one_design.Rd:10): Warning: missing </ul> before </div> is_valid_one_nuisance.html:46:1 (is_valid_one_nuisance.Rd:10): Warning: missing </ul> before </div> is_valid_one_scrub.html:46:1 (is_valid_one_scrub.Rd:10): Warning: missing </ul> before </div> mask_Param_vertices.html:41:1 (mask_Param_vertices.Rd:8): Warning: missing </ul> before </div> mean_var_Tol_Param.html:42:1 (mean_var_Tol_Param.Rd:9): Warning: missing </ul> before </div> nuisance_Param_BayesGLM.html:52:1 (nuisance_Param_BayesGLM.Rd:19): Warning: missing </ul> before </div> resamp_res_Param_BayesGLM.html:46:1 (resamp_res_Param_BayesGLM.Rd:13): Warning: missing </ul> before </div> scale_BOLD_Param.html:50:1 (scale_BOLD_Param.Rd:12): Warning: missing </ul> before </div> scrub_Param_BayesGLM.html:48:1 (scrub_Param_BayesGLM.Rd:15): Warning: missing </ul> before </div> session_names_Param.html:43:1 (session_names_Param.Rd:10): Warning: missing </ul> before </div> surfaces_Param_BayesGLM.html:47:1 (surfaces_Param_BayesGLM.Rd:14): Warning: missing </ul> before </div> verbose_Param.html:42:1 (verbose_Param.Rd:9): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Package templateICAr

Current CRAN status: NOTE: 3, OK: 10

Version: 0.10.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: Chol_samp_fun.html:66:1 (Chol_samp_fun.Rd:20): Warning: missing </ul> before </div> GSR_Param.html:42:1 (GSR_Param.Rd:9): Warning: missing </ul> before </div> TR_param.html:41:1 (TR_param.Rd:8): Warning: missing </ul> before </div> UT2mat.html:50:1 (UT2mat.Rd:12): Warning: missing </ul> before </div> estimate_template_FC.html:51:1 (estimate_template_FC.Rd:13): Warning: missing </ul> before </div> format_activation_name.html:51:1 (format_activation_name.Rd:13): Warning: missing </ul> before </div> hpf_param.html:49:1 (hpf_param.Rd:16): Warning: missing </ul> before </div> removebs_template.html:50:1 (removebs_template.Rd:12): Warning: missing </ul> before </div> scale_Param.html:43:1 (scale_Param.Rd:10): Warning: missing </ul> before </div> struct_template.html:69:1 (struct_template.Rd:25): Warning: missing </ul> before </div> varTol_Param.html:44:1 (varTol_Param.Rd:11): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.10.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64