Last updated on 2025-12-06 00:48:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.12 | 6.02 | 98.09 | 104.11 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.12 | 3.99 | 38.07 | 42.06 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.12 | 14.00 | 132.99 | 146.99 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.4.12 | 13.00 | 149.14 | 162.14 | OK | |
| r-devel-windows-x86_64 | 0.4.12 | 6.00 | 111.00 | 117.00 | OK | |
| r-patched-linux-x86_64 | 0.4.12 | 6.17 | 87.67 | 93.84 | OK | |
| r-release-linux-x86_64 | 0.4.12 | 4.49 | 88.23 | 92.72 | OK | |
| r-release-macos-arm64 | 0.4.12 | OK | ||||
| r-release-macos-x86_64 | 0.4.12 | 5.00 | 115.00 | 120.00 | OK | |
| r-release-windows-x86_64 | 0.4.12 | 7.00 | 108.00 | 115.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.12 | OK | ||||
| r-oldrel-macos-x86_64 | 0.4.12 | 6.00 | 145.00 | 151.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.12 | 9.00 | 137.00 | 146.00 | OK |
Version: 0.4.12
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'jmv', 'knitr', 'rmarkdown', 'RProtoBuf'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.12
Check: examples
Result: ERROR
Running examples in ‘jmvReadWrite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: describe_omv
> ### Title: Adds a title and a description for a data set stored as
> ### .omv-file for the statistical spreadsheet 'jamovi'
> ### (<https://www.jamovi.org>)
> ### Aliases: describe_omv
>
> ### ** Examples
>
> dtaFrm <- jmvReadWrite::ToothGrowth[, c("len", "supp", "dose")]
> nmeOut <- tempfile(fileext = ".omv")
>
> # the paste's underneath are only for readability (without them, the vignettes are misformatted)
> lstDsc <- list(description = paste("The response is the length of odontoblasts (cells responsible",
+ "for tooth growth) in 60 guinea pigs. Each animal received one",
+ "of three dose levels of vitamin C (0.5, 1, and 2 mg / day) by",
+ "one of two delivery methods, orange juice or ascorbic acid (a",
+ "form of vitamin C and coded as VC)."),
+ variables = list(len = "Tooth length",
+ supp = "Supplement type (VC or OJ)",
+ dose = "Dose (in milligrams / day"),
+ references = paste("Crampton, E. W. (1947). The growth of the odontoblast of the",
+ "incisor teeth as a criterion of vitamin C intake of the guinea",
+ "pig. <em>The Journal of Nutrition, 33</em>(5), 491-504.",
+ "https://doi.org/10.1093/jn/33.5.491"),
+ license = "")
> jmvReadWrite::describe_omv(dtaInp = dtaFrm, fleOut = nmeOut, dtaTtl = "ToothGrowth",
+ dtaDsc = lstDsc)
Warning in jmvPtB() :
For using protocol buffers, the package(s) "RProtoBuf" need(s) to be installed.
Error in jmvReadWrite::describe_omv(dtaInp = dtaFrm, fleOut = nmeOut, :
The R-packages RProtoBuf and jmvcore must be installed for using describe_omv (see warnings() for further details).
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.12
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/12s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (nzchar(system.file(package = "testthat"))) {
+ library(testthat)
+ library(jmvReadWrite)
+
+ test_check("jmvReadWrite")
+ }
Attaching package: 'jmvReadWrite'
The following object is masked from 'package:datasets':
ToothGrowth
Saving _problems/test-arrange_cols_omv-119.R
Saving _problems/test-describe_omv-20.R
Saving _problems/test-globals-53.R
Saving _problems/test-label_vars_omv-102.R
Saving _problems/test-merge_cols_omv-115.R
Saving _problems/test-read_omv-58.R
Saving _problems/test-read_omv-60.R
Saving _problems/test-read_omv-60.R
Saving _problems/test-sort_omv-67.R
[ FAIL 9 | WARN 10 | SKIP 2 | PASS 1400 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• {RProtoBuf} is not installed. (2): 'test-globals.R:54:5',
'test-write_omv.R:224:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-arrange_cols_omv.R:116:5'): arrange_cols_omv works ───────────
Expected `attr(df4Chk, "syntax")` to equal `c(...)`.
Differences:
`actual` is NULL
`expected` is a character vector ('jmv::ANOVA(formula = len ~ supp + dose2 + supp:dose2, data = data, effectSize = "partEta", modelTest = TRUE, qq = TRUE, contrasts = list(list(var="supp", type="none"), list(var="dose2", type="polynomial")), postHoc = ~ supp + dose2, emMeans = ~ dose2:supp)', 'jmv::ancova(formula = len ~ supp + dose, data = data, effectSize = "partEta", modelTest = TRUE)')
── Error ('test-describe_omv.R:20:9'): describe_omv works ──────────────────────
Error in `describe_omv(dtaInp = jmvReadWrite::ToothGrowth[, c("len", "supp", "dose")], fleOut = nmeOut, dtaTtl = "ToothGrowth", dtaDsc = lstDsc)`: The R-packages RProtoBuf and jmvcore must be installed for using describe_omv (see warnings() for further details).
Backtrace:
▆
1. └─jmvReadWrite::describe_omv(...) at test-describe_omv.R:20:9
── Failure ('test-globals.R:53:5'): globals work ───────────────────────────────
Expected `jmvPtB()` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test-label_vars_omv.R:99:5'): label_vars_omv works ────────────────
Expected `attr(df4Chk, "syntax")` to equal `c(...)`.
Differences:
`actual` is NULL
`expected` is a character vector ('jmv::ANOVA(formula = len ~ supp + dose2 + supp:dose2, data = data, effectSize = "partEta", modelTest = TRUE, qq = TRUE, contrasts = list(list(var="supp", type="none"), list(var="dose2", type="polynomial")), postHoc = ~ supp + dose2, emMeans = ~ dose2:supp)', 'jmv::ancova(formula = len ~ supp + dose, data = data, effectSize = "partEta", modelTest = TRUE)')
── Failure ('test-merge_cols_omv.R:112:5'): merge_cols_omv works ───────────────
Expected `attr(df4Chk, "syntax")` to equal `c(...)`.
Differences:
`actual` is NULL
`expected` is a character vector ('jmv::ANOVA(formula = len ~ supp + dose2 + supp:dose2, data = data, effectSize = "partEta", modelTest = TRUE, qq = TRUE, contrasts = list(list(var="supp", type="none"), list(var="dose2", type="polynomial")), postHoc = ~ supp + dose2, emMeans = ~ dose2:supp)', 'jmv::ancova(formula = len ~ supp + dose, data = data, effectSize = "partEta", modelTest = TRUE)')
── Failure ('test-read_omv.R:58:5'): read_omv works ────────────────────────────
Expected `names(attributes(df4Chk))` to equal `c("names", "row.names", "class", "fltLst", "syntax", "protobuf")`.
Differences:
`actual[2:5]`: "row.names" "class" "fltLst" "protobuf"
`expected[2:6]`: "row.names" "class" "fltLst" "syntax" "protobuf"
── Failure ('test-read_omv.R:60:5'): read_omv works ────────────────────────────
`attr(df4Chk, "syntax")` must be a vector, not `NULL`.
Backtrace:
▆
1. ├─testthat::expect_vector(attr(df4Chk, "syntax"), c(), 2) at test-read_omv.R:60:5
2. │ ├─base::withCallingHandlers(...)
3. │ └─vctrs::vec_assert(act$val, ptype = ptype, size = size, arg = act$lab)
4. │ └─vctrs:::stop_scalar_type(x, arg, call = call)
5. │ └─vctrs:::stop_vctrs(...)
6. │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
7. │ └─rlang:::signal_abort(cnd, .file)
8. │ └─base::signalCondition(cnd)
9. └─testthat (local) `<fn>`(`<vctrs___>`)
── Error ('test-read_omv.R:60:5'): read_omv works ──────────────────────────────
<vctrs_error_scalar_type/vctrs_error/rlang_error/error/condition>
Error in `expect_vector(attr(df4Chk, "syntax"), c(), 2)`: `attr(df4Chk, "syntax")` must be a vector, not `NULL`.
Backtrace:
▆
1. └─testthat::expect_vector(attr(df4Chk, "syntax"), c(), 2) at test-read_omv.R:60:5
2. ├─base::withCallingHandlers(...)
3. └─vctrs::vec_assert(act$val, ptype = ptype, size = size, arg = act$lab)
4. └─vctrs:::stop_scalar_type(x, arg, call = call)
5. └─vctrs:::stop_vctrs(...)
6. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
── Failure ('test-sort_omv.R:64:5'): sort_omv works ────────────────────────────
Expected `attr(df4Chk, "syntax")` to equal `c(...)`.
Differences:
`actual` is NULL
`expected` is a character vector ('jmv::ANOVA(formula = len ~ supp + dose2 + supp:dose2, data = data, effectSize = "partEta", modelTest = TRUE, qq = TRUE, contrasts = list(list(var="supp", type="none"), list(var="dose2", type="polynomial")), postHoc = ~ supp + dose2, emMeans = ~ dose2:supp)', 'jmv::ancova(formula = len ~ supp + dose, data = data, effectSize = "partEta", modelTest = TRUE)')
[ FAIL 9 | WARN 10 | SKIP 2 | PASS 1400 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.12
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc