Last updated on 2025-12-06 00:48:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.2 | 14.00 | 108.38 | 122.38 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.2 | 8.29 | 30.22 | 38.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.2 | 33.00 | 155.26 | 188.26 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.2 | 27.00 | 159.43 | 186.43 | OK | |
| r-devel-windows-x86_64 | 0.0.2 | 12.00 | 120.00 | 132.00 | OK | |
| r-patched-linux-x86_64 | 0.0.2 | 13.96 | 98.01 | 111.97 | OK | |
| r-release-linux-x86_64 | 0.0.2 | 12.76 | 99.82 | 112.58 | OK | |
| r-release-macos-arm64 | 0.0.2 | OK | ||||
| r-release-macos-x86_64 | 0.0.2 | 13.00 | 107.00 | 120.00 | OK | |
| r-release-windows-x86_64 | 0.0.2 | 14.00 | 121.00 | 135.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.0.2 | 9.00 | 99.00 | 108.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.2 | 13.00 | 143.00 | 156.00 | OK |
Version: 0.0.2
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'UpSetR', 'caret', 'ranger', 'glmnet', 'Boruta', 'knitr',
'rmarkdown', 'pROC'
VignetteBuilder packages required for checking but not installed:
'knitr', 'rmarkdown'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.2
Check: examples
Result: ERROR
Running examples in ‘fuseMLR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cobra
> ### Title: Cobra Meta Learner
> ### Aliases: cobra
>
> ### ** Examples
>
> # Example usage
> set.seed(123)
> x_train <- data.frame(a = runif(10L), b = runif(10L))
> y_train <- sample(0L:1L, size = 10L, replace = TRUE)
>
> # Train the model with epsilon optimization
> cobra_model <- cobra(x = x_train, y = y_train, tune = "epsilon", k_folds = 2)
Tuning 'epsilon' via cross-validation with 2 folds.
>
> # Make predictions on new data
> set.seed(156)
> x_new <- data.frame(a = runif(5L), b = runif(5L))
> prediction <- predict(object = cobra_model, data = x_new)
Error in loadNamespace(x) : there is no package called ‘caret’
Calls: predict ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(fuseMLR)
>
> test_check("fuseMLR")
Class : Data
name : geneexpr
ind. id. : IDS
n : 49
p : 132
Class: HashTable
id: test
-----------------
[1] key class
<0 rows> (or 0-length row.names)
Learner : ranger
TrainLayer : geneexpr
Package : ranger
Learn function : ranger
Training of base model on layer geneexpr started.
Saving _problems/test-Model-21.R
Saving _problems/test-Model-28.R
TrainLayer : geneexpr
Status : Not trained
Empty layer.
TrainData : methylation
Layer : methylation
ind. id. : IDS
target : disease
n : 50
Missing : 0
p : 367
Layer geneexpr
----------------
TrainLayer : geneexpr
Status : Not trained
Empty layer.
----------------
Object(s) on layer geneexpr
Empty layer
Layer geneexpr
----------------
TrainLayer : geneexpr
Status : Not trained
Nb. of objects stored : 3
----------------
Object(s) on layer geneexpr
----------------
Learner : ranger
TrainLayer : geneexpr
Package : ranger
Learn function : ranger
----------------
----------------
VarSel : varsel_geneexpr
TrainLayer : geneexpr
Package : Boruta
Function : Boruta
----------------
----------------
TrainData : geneexpr
Layer : geneexpr
Ind. id. : IDS
Target : disease
n : 50
Missing : 0
p : 131
----------------
Training of base model on layer geneexpr started.
TrainMetaLayer : meta
Status : Not trained
Empty layer.
MetaLayer
----------------
TrainMetaLayer : meta
Status : Not trained
Empty layer.
----------------
Object(s) on MetaLayer
Empty layer
Training : training
Problem type : classification
Status : Not trained
Number of layers: 0
Layers trained : 0
Saving _problems/test-Training-136.R
Variable selection on layer geneexpr started.
VarSel : varsel_geneexpr
TrainLayer : geneexpr
Package : Boruta
Function : Boruta
Tuning 'epsilon' via cross-validation with 5 folds.
Saving _problems/test-cobra-11.R
Tuning 'alpha' and 'epsilon' via cross-validation with 5 folds.
Saving _problems/test-cobra-20.R
Using user-defined 'epsilon' = 0.1.
Tuning 'epsilon' via cross-validation with 10 folds.
Tuning 'epsilon' via cross-validation with 10 folds.
Tuning 'epsilon' via cross-validation with 10 folds.
Tuning 'epsilon' via cross-validation with 10 folds.
Tuning 'epsilon' via cross-validation with 10 folds.
Tuning 'epsilon' via cross-validation with 10 folds.
Saving _problems/test-cobra-132.R
Tuning 'alpha' and 'epsilon' via cross-validation with 10 folds.
Saving _problems/test-cobra-141.R
[ FAIL 7 | WARN 0 | SKIP 4 | PASS 159 ]
══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-TrainMetaLayer.R:60:5', 'test-VarSel.R:43:5'
• {Boruta} is not installed. (1): 'test-Training.R:148:5'
• {ranger} is not installed. (1): 'test-TrainLayer.R:65:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-Model.R:19:3'): Model: all tests ─────────────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'ranger'
── Failure ('test-Model.R:22:3'): Model: all tests ─────────────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
No Model on layer geneexpr.
── Failure ('test-Training.R:134:3'): Training: all tests ──────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'UpSetR'
── Failure ('test-cobra.R:4:3'): cobra works ───────────────────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'caret'
── Failure ('test-cobra.R:13:3'): cobra works ──────────────────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'caret'
── Failure ('test-cobra.R:125:3'): cobra works ─────────────────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'caret'
── Failure ('test-cobra.R:134:3'): cobra works ─────────────────────────────────
Expected `{ ... }` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'caret'
[ FAIL 7 | WARN 0 | SKIP 4 | PASS 159 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.2
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc