Last updated on 2025-12-06 00:48:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0.0 | 2.27 | 114.33 | 116.60 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0.0 | 1.59 | 25.89 | 27.48 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0.0 | 189.13 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0.0 | 191.98 | OK | |||
| r-devel-windows-x86_64 | 1.0.0.0 | 3.00 | 111.00 | 114.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0.0 | 2.26 | 108.96 | 111.22 | OK | |
| r-release-linux-x86_64 | 1.0.0.0 | 2.09 | 108.84 | 110.93 | OK | |
| r-release-macos-arm64 | 1.0.0.0 | OK | ||||
| r-release-macos-x86_64 | 1.0.0.0 | 2.00 | 213.00 | 215.00 | OK | |
| r-release-windows-x86_64 | 1.0.0.0 | 3.00 | 111.00 | 114.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0.0 | 2.00 | 174.00 | 176.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0.0 | 4.00 | 147.00 | 151.00 | OK |
Version: 1.0.0.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'DESeq2', 'knitr', 'rmarkdown', 'tidyverse'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(dependentsimr)
>
> test_check("dependentsimr")
Saving _problems/test-dependentsim-77.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-dependentsim.R:77:1'): (code run outside of `test_that()`) ─────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fit_deseq(data)`: The package "DESeq2" is required Using type='DESeq2' requires DESeq2
Backtrace:
▆
1. └─dependentsimr::get_random_structure(...) at test-dependentsim.R:77:1
2. └─dependentsimr:::marginals_and_transform(datasets, types)
3. └─dependentsimr:::fit_deseq(data)
4. └─rlang::check_installed("DESeq2", reason = "Using type='DESeq2' requires DESeq2")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc