Last updated on 2025-12-06 00:48:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.19.1 | 11.12 | 411.66 | 422.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.19.1 | 8.74 | 148.71 | 157.45 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.19.1 | 26.00 | 638.84 | 664.84 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.19.1 | 65.00 | 645.64 | 710.64 | OK | |
| r-devel-windows-x86_64 | 1.19.1 | 18.00 | 425.00 | 443.00 | OK | |
| r-patched-linux-x86_64 | 1.19.1 | 16.06 | 388.81 | 404.87 | OK | |
| r-release-linux-x86_64 | 1.19.1 | 12.74 | 387.33 | 400.07 | OK | |
| r-release-macos-arm64 | 1.19.1 | OK | ||||
| r-release-macos-x86_64 | 1.19.1 | 10.00 | 317.00 | 327.00 | OK | |
| r-release-windows-x86_64 | 1.19.1 | 18.00 | 412.00 | 430.00 | OK | |
| r-oldrel-macos-arm64 | 1.19.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.19.1 | 11.00 | 331.00 | 342.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.19.1 | 24.00 | 557.00 | 581.00 | NOTE |
Version: 1.19.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'ape', 'heatmaply', 'covr'
Packages which this enhances but not available for checking:
'Hmisc', 'WGCNA', 'distory', 'phangorn'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.19.1
Check: examples
Result: ERROR
Running examples in ‘dendextend-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: collapse_branch
> ### Title: Collapse branches under a tolerance level
> ### Aliases: collapse_branch
>
> ### ** Examples
>
>
> # # ladderize is like sort(..., type = "node")
> dend <- iris[1:5, -5] %>%
+ dist() %>%
+ hclust() %>%
+ as.dendrogram()
> par(mfrow = c(1, 3))
> dend %>%
+ ladderize() %>%
+ plot(horiz = TRUE)
> abline(v = .2, col = 2, lty = 2)
> dend %>%
+ collapse_branch(tol = 0.2) %>%
+ ladderize() %>%
+ plot(horiz = TRUE)
> dend %>%
+ collapse_branch(tol = 0.2) %>%
+ ladderize() %>%
+ hang.dendrogram(hang = 0) %>%
+ plot(horiz = TRUE)
>
> par(mfrow = c(1, 2))
> dend %>%
+ collapse_branch(tol = 0.2, lower = FALSE) %>%
+ plot(horiz = TRUE, main = "dendrogram")
> library(ape)
Error in library(ape) : there is no package called ‘ape’
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.19.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [75s/75s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> library(dendextend)
---------------------
Welcome to dendextend version 1.19.1
Type citation('dendextend') for how to cite the package.
Type browseVignettes(package = 'dendextend') for the package vignette.
The github page is: https://github.com/talgalili/dendextend/
Suggestions and bug-reports can be submitted at: https://github.com/talgalili/dendextend/issues
You may ask questions at stackoverflow, use the r and dendextend tags:
https://stackoverflow.com/questions/tagged/dendextend
To suppress this message use: suppressPackageStartupMessages(library(dendextend))
---------------------
Attaching package: 'dendextend'
The following object is masked from 'package:stats':
cutree
> test_check("dendextend")
Saving _problems/test-tanglegram-125.R
[ FAIL 1 | WARN 1 | SKIP 8 | PASS 854 ]
══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• {ape} is not installed. (7): 'test-entanglement.R:137:3',
'test-is.functions.R:10:4', 'test-labels-assign.R:207:4',
'test-nleaves.R:44:3', 'test-prune.R:34:4', 'test-rotate.R:95:4',
'test-rotate.R:167:4'
• {data.table} is not installed. (1): 'test-set.dendrogram.R:236:4'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-tanglegram.R:123:4'): tanglegram works ───────────────────────
Expected `tanglegram.phylo(ape::as.phylo(dend1), ape::as.phylo(dend2))` not to throw any errors.
Actually got a <packageNotFoundError> with message:
there is no package called 'ape'
[ FAIL 1 | WARN 1 | SKIP 8 | PASS 854 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.19.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.19.1
Check: installed package size
Result: NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 5.8Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64