CRAN Package Check Results for Maintainer ‘Damiano Fantini <damiano.fantini at gmail.com>’

Last updated on 2025-10-21 00:50:36 CEST.

Package	NOTE	OK
colorhcplot		13
easyPubMed	1	12
mutSignatures	2	11
TCGAretriever	2	11

Package colorhcplot

Current CRAN status: OK: 13

Package easyPubMed

Current CRAN status: NOTE: 1, OK: 12

Version: 3.1.6
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: easyPubMed-print.html:47:1 (easyPubMed-print.Rd:10): Warning: missing </ul> before </div> easyPubMed-show.html:47:1 (easyPubMed-show.Rd:10): Warning: missing </ul> before </div> fetchEPMData.html:55:1 (fetchEPMData.Rd:17): Warning: missing </ul> before </div> getEPMData.html:49:1 (getEPMData.Rd:13): Warning: missing </ul> before </div> getEPMJobList.html:55:1 (getEPMJobList.Rd:13): Warning: missing </ul> before </div> getEPMMeta.html:49:1 (getEPMMeta.Rd:13): Warning: missing </ul> before </div> getEPMMisc.html:49:1 (getEPMMisc.Rd:13): Warning: missing </ul> before </div> getEPMQuery.html:49:1 (getEPMQuery.Rd:13): Warning: missing </ul> before </div> getEPMRaw.html:49:1 (getEPMRaw.Rd:13): Warning: missing </ul> before </div> getEPMUilist.html:50:1 (getEPMUilist.Rd:13): Warning: missing </ul> before </div> parseEPMData.html:56:1 (parseEPMData.Rd:17): Warning: missing </ul> before </div> setEPMData.html:53:1 (setEPMData.Rd:15): Warning: missing </ul> before </div> setEPMJobList.html:60:1 (setEPMJobList.Rd:16): Warning: missing </ul> before </div> setEPMMeta.html:53:1 (setEPMMeta.Rd:15): Warning: missing </ul> before </div> setEPMMisc.html:54:1 (setEPMMisc.Rd:15): Warning: missing </ul> before </div> setEPMQuery.html:55:1 (setEPMQuery.Rd:16): Warning: missing </ul> before </div> setEPMRaw.html:54:1 (setEPMRaw.Rd:15): Warning: missing </ul> before </div> setEPMUilist.html:54:1 (setEPMUilist.Rd:15): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Package mutSignatures

Current CRAN status: NOTE: 2, OK: 11

Version: 2.1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Damiano", family = "Fantini", role = c("aut", "cre"), email = "damiano.fantini@gmail.com"), person(given = "Vania", family = "Vidimar", role = "aut"), person(given = c("Joshua", "J"), family = "Meeks", role = "aut")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.1.1
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: as.data.frame-mutSignExposures-method.html:60:1 (as.data.frame-mutSignExposures-method.Rd:17): Warning: missing </ul> before </div> as.data.frame-mutationCounts-method.html:47:1 (as.data.frame-mutationCounts-method.Rd:11): Warning: missing </ul> before </div> as.data.frame-mutationSignatures-method.html:47:1 (as.data.frame-mutationSignatures-method.Rd:11): Warning: missing </ul> before </div> as.list-mutFrameworkParams-method.html:47:1 (as.list-mutFrameworkParams-method.Rd:11): Warning: missing </ul> before </div> as.list-mutationSignatures-method.html:47:1 (as.list-mutationSignatures-method.Rd:11): Warning: missing </ul> before </div> as.matrix-mutationCounts-method.html:47:1 (as.matrix-mutationCounts-method.Rd:11): Warning: missing </ul> before </div> as.mutation.counts.html:57:1 (as.mutation.counts.Rd:18): Warning: missing </ul> before </div> as.mutation.signatures.html:49:1 (as.mutation.signatures.Rd:13): Warning: missing </ul> before </div> as.mutsign.exposures.html:54:1 (as.mutsign.exposures.Rd:16): Warning: missing </ul> before </div> coerceObj-methods.html:71:1 (coerceObj-methods.Rd:29): Warning: missing </ul> before </div> getCounts.html:49:1 (getCounts.Rd:13): Warning: missing </ul> before </div> getFwkParam.html:53:1 (getFwkParam.Rd:15): Warning: missing </ul> before </div> getMutationTypes.html:53:1 (getMutationTypes.Rd:17): Warning: missing </ul> before </div> getSampleIdentifiers.html:53:1 (getSampleIdentifiers.Rd:17): Warning: missing </ul> before </div> getSignatureIdentifiers.html:53:1 (getSignatureIdentifiers.Rd:17): Warning: missing </ul> before </div> msigPlot.html:68:1 (msigPlot.Rd:30): Warning: missing </ul> before </div> mutFrameworkParams-show.html:56:1 (mutFrameworkParams-show.Rd:15): Warning: missing </ul> before </div> mutSignExposures-show.html:56:1 (mutSignExposures-show.Rd:15): Warning: missing </ul> before </div> mutationCounts-show.html:56:1 (mutationCounts-show.Rd:15): Warning: missing </ul> before </div> mutationSignatures-show.html:56:1 (mutationSignatures-show.Rd:15): Warning: missing </ul> before </div> setFwkParam.html:59:1 (setFwkParam.Rd:18): Warning: missing </ul> before </div> sub-mutSignExposures-numeric-ANY-ANY-method.html:51:1 (sub-mutSignExposures-numeric-ANY-ANY-method.Rd:14): Warning: missing </ul> before </div> sub-mutationCounts-numeric-ANY-ANY-method.html:51:1 (sub-mutationCounts-numeric-ANY-ANY-method.Rd:14): Warning: missing </ul> before </div> sub-mutationSignatures-numeric-ANY-ANY-method.html:51:1 (sub-mutationSignatures-numeric-ANY-ANY-method.Rd:14): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Package TCGAretriever

Current CRAN status: NOTE: 2, OK: 11

Version: 1.9.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Damiano", family = "Fantini", role = c("aut", "cre"), email = "damiano.fantini@gmail.com") as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc