Last updated on 2025-07-03 13:48:58 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ctsem | 1 | 2 | 8 |
| ctsemOMX | 2 | 6 | 5 |
Current CRAN status: ERROR: 1, NOTE: 2, OK: 8
Version: 3.10.3
Check: whether the package can be unloaded cleanly
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: package or namespace load failed for ‘ctsem’:
.onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: whether the namespace can be loaded with stated dependencies
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: whether the namespace can be unloaded cleanly
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: loading without being on the library search path
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Loading required package: Rcpp
Error: package or namespace load failed for ‘ctsem’:
.onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: dependencies in R code
Result: NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: S3 generic/method consistency
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: replacement functions
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: foreign function calls
Result: NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: R code for possible problems
Result: ERROR
Incorrect (un)loading of package shared object.
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
The system-specific extension for shared objects must not be added.
See ?library.dynam.
[28s/39s] NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Found the following possibly unsafe calls:
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See section ‘Good practice’ in ‘?data’.
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
5: runHook(".onLoad", env, package.lib, package)
4: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
3: asNamespace(ns)
2: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
1: loadNamespace(package, lib.loc)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: for missing documentation entries
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: package or namespace load failed for ‘ctsem’:
.onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
attr(package, "LibPath") <- which.lib.loc
ns <- loadNamespace(package, lib.loc)
env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
}, error = function(e) {
P <- if (!is.null(cc <- conditionCall(e)))
paste(" in", deparse(cc)[1L])
else ""
msg <- gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e))
if (logical.return && !quietly)
message(paste("Error:", msg), domain = NA)
else stop(msg, call. = FALSE, domain = NA)
})
1: library(package, lib.loc = lib.l
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.10.3
Check: installed package size
Result: NOTE
installed size is 201.7Mb
sub-directories of 1Mb or more:
R 2.0Mb
data 1.7Mb
libs 196.6Mb
Flavor: r-oldrel-macos-arm64
Version: 3.10.3
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavor: r-oldrel-macos-arm64
Version: 3.10.4
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 11.7Mb
sub-directories of 1Mb or more:
R 1.2Mb
data 1.7Mb
libs 7.5Mb
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 2, NOTE: 6, OK: 5
Version: 1.0.6
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ctFit.Rd: ctModel
ctModelFromFit.Rd: ctModel
ctMultigroupFit.Rd: ctLongToWide, ctModel
ctPostPredict.Rd: ctPlotArray
ctRefineTo.Rd: ctModel
ctsemOMX.Rd: ctModel
summary.ctsemFit.Rd: ctModel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.6
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
ctFit.Rd: ctModel
ctModelFromFit.Rd: ctModel
ctMultigroupFit.Rd: ctLongToWide, ctModel
ctPostPredict.Rd: ctPlotArray
ctRefineTo.Rd: ctModel
ctsemOMX.Rd: ctModel
summary.ctsemFit.Rd: ctModel
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 1.0.6
Check: package dependencies
Result: ERROR
Package required but not available: ‘ctsem’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64