CRAN Package Check Results for Maintainer ‘Chen Yang <cafferychen777 at tamu.edu>’

Last updated on 2025-10-21 00:50:33 CEST.

Package	ERROR	NOTE	OK
mLLMCelltype	1	3	9

Package mLLMCelltype

Current CRAN status: ERROR: 1, NOTE: 3, OK: 9

Version: 1.3.2
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: AnthropicProcessor.html:239:1 (AnthropicProcessor.Rd:128): Warning: missing </ul> before </div> AnthropicProcessor.html:115:1 (AnthropicProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined AnthropicProcessor.html:138:1 (AnthropicProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined AnthropicProcessor.html:144:1 (AnthropicProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined AnthropicProcessor.html:161:1 (AnthropicProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined AnthropicProcessor.html:178:1 (AnthropicProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined AnthropicProcessor.html:184:1 (AnthropicProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined AnthropicProcessor.html:199:1 (AnthropicProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined AnthropicProcessor.html:216:1 (AnthropicProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined AnthropicProcessor.html:222:1 (AnthropicProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined BaseAPIProcessor.html:314:1 (BaseAPIProcessor.Rd:171): Warning: missing </ul> before </div> BaseAPIProcessor.html:126:1 (BaseAPIProcessor.Rd:63): Warning: <h5> anchor "Usage" already defined BaseAPIProcessor.html:132:1 (BaseAPIProcessor.Rd:67): Warning: <h5> anchor "Arguments" already defined BaseAPIProcessor.html:166:1 (BaseAPIProcessor.Rd:87): Warning: <h5> anchor "Usage" already defined BaseAPIProcessor.html:172:1 (BaseAPIProcessor.Rd:91): Warning: <h5> anchor "Returns" already defined BaseAPIProcessor.html:189:1 (BaseAPIProcessor.Rd:100): Warning: <h5> anchor "Usage" already defined BaseAPIProcessor.html:195:1 (BaseAPIProcessor.Rd:104): Warning: <h5> anchor "Returns" already defined BaseAPIProcessor.html:212:1 (BaseAPIProcessor.Rd:113): Warning: <h5> anchor "Usage" already defined BaseAPIProcessor.html:218:1 (BaseAPIProcessor.Rd:117): Warning: <h5> anchor "Arguments" already defined BaseAPIProcessor.html:235:1 (BaseAPIProcessor.Rd:128): Warning: <h5> anchor "Returns" already defined BaseAPIProcessor.html:252:1 (BaseAPIProcessor.Rd:137): Warning: <h5> anchor "Usage" already defined BaseAPIProcessor.html:258:1 (BaseAPIProcessor.Rd:141): Warning: <h5> anchor "Arguments" already defined BaseAPIProcessor.html:273:1 (BaseAPIProcessor.Rd:150): Warning: <h5> anchor "Returns" already defined BaseAPIProcessor.html:291:1 (BaseAPIProcessor.Rd:160): Warning: <h5> anchor "Usage" already defined BaseAPIProcessor.html:297:1 (BaseAPIProcessor.Rd:164): Warning: <h5> anchor "Arguments" already defined CacheManager.html:373:1 (CacheManager.Rd:199): Warning: missing </ul> before </div> CacheManager.html:118:1 (CacheManager.Rd:54): Warning: <h5> anchor "Usage" already defined CacheManager.html:124:1 (CacheManager.Rd:58): Warning: <h5> anchor "Arguments" already defined CacheManager.html:158:1 (CacheManager.Rd:78): Warning: <h5> anchor "Usage" already defined CacheManager.html:164:1 (CacheManager.Rd:82): Warning: <h5> anchor "Arguments" already defined CacheManager.html:189:1 (CacheManager.Rd:97): Warning: <h5> anchor "Usage" already defined CacheManager.html:195:1 (CacheManager.Rd:101): Warning: <h5> anchor "Arguments" already defined CacheManager.html:208:1 (CacheManager.Rd:108): Warning: <h5> anchor "Returns" already defined CacheManager.html:225:1 (CacheManager.Rd:117): Warning: <h5> anchor "Usage" already defined CacheManager.html:231:1 (CacheManager.Rd:121): Warning: <h5> anchor "Arguments" already defined CacheManager.html:244:1 (CacheManager.Rd:128): Warning: <h5> anchor "Returns" already defined CacheManager.html:261:1 (CacheManager.Rd:137): Warning: <h5> anchor "Usage" already defined CacheManager.html:267:1 (CacheManager.Rd:141): Warning: <h5> anchor "Returns" already defined CacheManager.html:284:1 (CacheManager.Rd:150): Warning: <h5> anchor "Usage" already defined CacheManager.html:290:1 (CacheManager.Rd:154): Warning: <h5> anchor "Arguments" already defined CacheManager.html:313:1 (CacheManager.Rd:167): Warning: <h5> anchor "Usage" already defined CacheManager.html:319:1 (CacheManager.Rd:171): Warning: <h5> anchor "Arguments" already defined CacheManager.html:332:1 (CacheManager.Rd:178): Warning: <h5> anchor "Returns" already defined CacheManager.html:350:1 (CacheManager.Rd:188): Warning: <h5> anchor "Usage" already defined CacheManager.html:356:1 (CacheManager.Rd:192): Warning: <h5> anchor "Arguments" already defined DeepSeekProcessor.html:239:1 (DeepSeekProcessor.Rd:128): Warning: missing </ul> before </div> DeepSeekProcessor.html:115:1 (DeepSeekProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined DeepSeekProcessor.html:138:1 (DeepSeekProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined DeepSeekProcessor.html:144:1 (DeepSeekProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined DeepSeekProcessor.html:161:1 (DeepSeekProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined DeepSeekProcessor.html:178:1 (DeepSeekProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined DeepSeekProcessor.html:184:1 (DeepSeekProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined DeepSeekProcessor.html:199:1 (DeepSeekProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined DeepSeekProcessor.html:216:1 (DeepSeekProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined DeepSeekProcessor.html:222:1 (DeepSeekProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined GeminiProcessor.html:278:1 (GeminiProcessor.Rd:149): Warning: missing </ul> before </div> GeminiProcessor.html:118:1 (GeminiProcessor.Rd:59): Warning: <h5> anchor "Usage" already defined GeminiProcessor.html:141:1 (GeminiProcessor.Rd:72): Warning: <h5> anchor "Usage" already defined GeminiProcessor.html:147:1 (GeminiProcessor.Rd:76): Warning: <h5> anchor "Arguments" already defined GeminiProcessor.html:160:1 (GeminiProcessor.Rd:83): Warning: <h5> anchor "Returns" already defined GeminiProcessor.html:177:1 (GeminiProcessor.Rd:92): Warning: <h5> anchor "Usage" already defined GeminiProcessor.html:183:1 (GeminiProcessor.Rd:96): Warning: <h5> anchor "Arguments" already defined GeminiProcessor.html:200:1 (GeminiProcessor.Rd:107): Warning: <h5> anchor "Returns" already defined GeminiProcessor.html:217:1 (GeminiProcessor.Rd:116): Warning: <h5> anchor "Usage" already defined GeminiProcessor.html:223:1 (GeminiProcessor.Rd:120): Warning: <h5> anchor "Arguments" already defined GeminiProcessor.html:238:1 (GeminiProcessor.Rd:129): Warning: <h5> anchor "Returns" already defined GeminiProcessor.html:255:1 (GeminiProcessor.Rd:138): Warning: <h5> anchor "Usage" already defined GeminiProcessor.html:261:1 (GeminiProcessor.Rd:142): Warning: <h5> anchor "Arguments" already defined GrokProcessor.html:239:1 (GrokProcessor.Rd:128): Warning: missing </ul> before </div> GrokProcessor.html:115:1 (GrokProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined GrokProcessor.html:138:1 (GrokProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined GrokProcessor.html:144:1 (GrokProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined GrokProcessor.html:161:1 (GrokProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined GrokProcessor.html:178:1 (GrokProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined GrokProcessor.html:184:1 (GrokProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined GrokProcessor.html:199:1 (GrokProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined GrokProcessor.html:216:1 (GrokProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined GrokProcessor.html:222:1 (GrokProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined MinimaxProcessor.html:239:1 (MinimaxProcessor.Rd:128): Warning: missing </ul> before </div> MinimaxProcessor.html:115:1 (MinimaxProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined MinimaxProcessor.html:138:1 (MinimaxProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined MinimaxProcessor.html:144:1 (MinimaxProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined MinimaxProcessor.html:161:1 (MinimaxProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined MinimaxProcessor.html:178:1 (MinimaxProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined MinimaxProcessor.html:184:1 (MinimaxProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined MinimaxProcessor.html:199:1 (MinimaxProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined MinimaxProcessor.html:216:1 (MinimaxProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined MinimaxProcessor.html:222:1 (MinimaxProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined OpenAIProcessor.html:239:1 (OpenAIProcessor.Rd:128): Warning: missing </ul> before </div> OpenAIProcessor.html:115:1 (OpenAIProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined OpenAIProcessor.html:138:1 (OpenAIProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined OpenAIProcessor.html:144:1 (OpenAIProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined OpenAIProcessor.html:161:1 (OpenAIProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined OpenAIProcessor.html:178:1 (OpenAIProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined OpenAIProcessor.html:184:1 (OpenAIProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined OpenAIProcessor.html:199:1 (OpenAIProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined OpenAIProcessor.html:216:1 (OpenAIProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined OpenAIProcessor.html:222:1 (OpenAIProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined OpenRouterProcessor.html:239:1 (OpenRouterProcessor.Rd:128): Warning: missing </ul> before </div> OpenRouterProcessor.html:115:1 (OpenRouterProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined OpenRouterProcessor.html:138:1 (OpenRouterProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined OpenRouterProcessor.html:144:1 (OpenRouterProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined OpenRouterProcessor.html:161:1 (OpenRouterProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined OpenRouterProcessor.html:178:1 (OpenRouterProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined OpenRouterProcessor.html:184:1 (OpenRouterProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined OpenRouterProcessor.html:199:1 (OpenRouterProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined OpenRouterProcessor.html:216:1 (OpenRouterProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined OpenRouterProcessor.html:222:1 (OpenRouterProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined QwenProcessor.html:303:1 (QwenProcessor.Rd:166): Warning: missing </ul> before </div> QwenProcessor.html:143:1 (QwenProcessor.Rd:76): Warning: <h5> anchor "Usage" already defined QwenProcessor.html:149:1 (QwenProcessor.Rd:80): Warning: <h5> anchor "Returns" already defined QwenProcessor.html:166:1 (QwenProcessor.Rd:89): Warning: <h5> anchor "Usage" already defined QwenProcessor.html:172:1 (QwenProcessor.Rd:93): Warning: <h5> anchor "Arguments" already defined QwenProcessor.html:185:1 (QwenProcessor.Rd:100): Warning: <h5> anchor "Returns" already defined QwenProcessor.html:202:1 (QwenProcessor.Rd:109): Warning: <h5> anchor "Usage" already defined QwenProcessor.html:208:1 (QwenProcessor.Rd:113): Warning: <h5> anchor "Arguments" already defined QwenProcessor.html:225:1 (QwenProcessor.Rd:124): Warning: <h5> anchor "Returns" already defined QwenProcessor.html:242:1 (QwenProcessor.Rd:133): Warning: <h5> anchor "Usage" already defined QwenProcessor.html:248:1 (QwenProcessor.Rd:137): Warning: <h5> anchor "Arguments" already defined QwenProcessor.html:263:1 (QwenProcessor.Rd:146): Warning: <h5> anchor "Returns" already defined QwenProcessor.html:280:1 (QwenProcessor.Rd:155): Warning: <h5> anchor "Usage" already defined QwenProcessor.html:286:1 (QwenProcessor.Rd:159): Warning: <h5> anchor "Arguments" already defined StepFunProcessor.html:239:1 (StepFunProcessor.Rd:128): Warning: missing </ul> before </div> StepFunProcessor.html:115:1 (StepFunProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined StepFunProcessor.html:138:1 (StepFunProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined StepFunProcessor.html:144:1 (StepFunProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined StepFunProcessor.html:161:1 (StepFunProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined StepFunProcessor.html:178:1 (StepFunProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined StepFunProcessor.html:184:1 (StepFunProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined StepFunProcessor.html:199:1 (StepFunProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined StepFunProcessor.html:216:1 (StepFunProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined StepFunProcessor.html:222:1 (StepFunProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:587:1 (UnifiedLogger.Rd:356): Warning: missing </ul> before </div> UnifiedLogger.html:171:1 (UnifiedLogger.Rd:94): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:177:1 (UnifiedLogger.Rd:98): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:202:1 (UnifiedLogger.Rd:113): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:208:1 (UnifiedLogger.Rd:117): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:233:1 (UnifiedLogger.Rd:132): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:239:1 (UnifiedLogger.Rd:136): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:264:1 (UnifiedLogger.Rd:151): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:270:1 (UnifiedLogger.Rd:155): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:295:1 (UnifiedLogger.Rd:170): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:307:1 (UnifiedLogger.Rd:180): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:338:1 (UnifiedLogger.Rd:201): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:351:1 (UnifiedLogger.Rd:212): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:384:1 (UnifiedLogger.Rd:235): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:390:1 (UnifiedLogger.Rd:239): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:417:1 (UnifiedLogger.Rd:256): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:423:1 (UnifiedLogger.Rd:260): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:450:1 (UnifiedLogger.Rd:277): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:456:1 (UnifiedLogger.Rd:281): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:483:1 (UnifiedLogger.Rd:298): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:506:1 (UnifiedLogger.Rd:311): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:512:1 (UnifiedLogger.Rd:315): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:535:1 (UnifiedLogger.Rd:328): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:541:1 (UnifiedLogger.Rd:332): Warning: <h5> anchor "Arguments" already defined UnifiedLogger.html:564:1 (UnifiedLogger.Rd:345): Warning: <h5> anchor "Usage" already defined UnifiedLogger.html:570:1 (UnifiedLogger.Rd:349): Warning: <h5> anchor "Arguments" already defined ZhipuProcessor.html:239:1 (ZhipuProcessor.Rd:128): Warning: missing </ul> before </div> ZhipuProcessor.html:115:1 (ZhipuProcessor.Rd:58): Warning: <h5> anchor "Usage" already defined ZhipuProcessor.html:138:1 (ZhipuProcessor.Rd:71): Warning: <h5> anchor "Usage" already defined ZhipuProcessor.html:144:1 (ZhipuProcessor.Rd:75): Warning: <h5> anchor "Arguments" already defined ZhipuProcessor.html:161:1 (ZhipuProcessor.Rd:86): Warning: <h5> anchor "Returns" already defined ZhipuProcessor.html:178:1 (ZhipuProcessor.Rd:95): Warning: <h5> anchor "Usage" already defined ZhipuProcessor.html:184:1 (ZhipuProcessor.Rd:99): Warning: <h5> anchor "Arguments" already defined ZhipuProcessor.html:199:1 (ZhipuProcessor.Rd:108): Warning: <h5> anchor "Returns" already defined ZhipuProcessor.html:216:1 (ZhipuProcessor.Rd:117): Warning: <h5> anchor "Usage" already defined ZhipuProcessor.html:222:1 (ZhipuProcessor.Rd:121): Warning: <h5> anchor "Arguments" already defined configure_logger.html:54:1 (configure_logger.Rd:14): Warning: missing </ul> before </div> logging_functions.html:56:1 (logging_functions.Rd:22): Warning: missing </ul> before </div> Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.2
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: doc 4.9Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'getting-started.Rmd' using rmarkdown File ../man/figures/logo.png not found in resource path Error: processing vignette 'getting-started.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'getting-started.Rmd' --- re-building 'introduction.Rmd' using rmarkdown File ../man/figures/logo.png not found in resource path Error: processing vignette 'introduction.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'introduction.Rmd' --- re-building 'usage-tutorial.Rmd' using rmarkdown File ../man/figures/logo.png not found in resource path Error: processing vignette 'usage-tutorial.Rmd' failed with diagnostics: pandoc document conversion failed with error 99 --- failed re-building 'usage-tutorial.Rmd' --- re-building 'visualization-guide.Rmd' using rmarkdown --- finished re-building 'visualization-guide.Rmd' SUMMARY: processing the following files failed: 'getting-started.Rmd' 'introduction.Rmd' 'usage-tutorial.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64