Last updated on 2025-12-06 00:48:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.3 | 9.73 | 370.53 | 380.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.3 | 6.08 | 227.52 | 233.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.3 | 20.00 | 590.43 | 610.43 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.3.3 | 24.00 | 586.78 | 610.78 | OK | |
| r-devel-windows-x86_64 | 1.3.3 | 15.00 | 233.00 | 248.00 | OK | |
| r-patched-linux-x86_64 | 1.3.3 | 9.56 | 359.58 | 369.14 | OK | |
| r-release-linux-x86_64 | 1.3.3 | 7.70 | 359.97 | 367.67 | OK | |
| r-release-macos-arm64 | 1.3.3 | OK | ||||
| r-release-macos-x86_64 | 1.3.3 | 21.00 | 298.00 | 319.00 | OK | |
| r-release-windows-x86_64 | 1.3.3 | 15.00 | 232.00 | 247.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.3 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.3.3 | 14.00 | 264.00 | 278.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.3.3 | 18.00 | 313.00 | 331.00 | NOTE |
Version: 1.3.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'knitr', 'openxlsx', 'rmarkdown'
Packages which this enhances but not available for checking:
'asreml', 'ARTool', 'lme4', 'sommer'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [136s/71s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biometryassist)
>
> test_check("biometryassist")
Starting 2 test processes.
Saving _problems/test-export_excel-7.R
Saving _problems/test-export_excel-17.R
Saving _problems/test-export_excel-27.R
> test-design.R: Saving 7 x 7 in image
> test-design.R: Saving 7 x 7 in image
> test-design.R: Saving 7 x 7 in image
> test-mct.R: A B C predicted.value std.error df groups ci low up
> test-mct.R: 1 1 2 1 99.08 0.63 54 a 1.27 97.81 100.36
> test-mct.R: 2 1 3 2 99.26 0.63 54 a 1.27 97.99 100.53
> test-mct.R: 3 3 3 1 99.57 0.63 54 a 1.27 98.30 100.85
> test-mct.R: 4 2 3 1 99.73 0.63 54 a 1.27 98.45 101.00
> test-mct.R: 5 3 3 2 99.73 0.63 54 a 1.27 98.46 101.00
> test-mct.R: 6 2 1 3 99.73 0.63 54 a 1.27 98.46 101.00
> test-mct.R: 7 2 1 2 99.77 0.63 54 a 1.27 98.50 101.04
> test-mct.R: 8 1 1 3 99.79 0.63 54 a 1.27 98.52 101.06
> test-mct.R: 9 1 2 3 99.90 0.63 54 a 1.27 98.63 101.17
> test-mct.R: 10 2 1 1 99.94 0.63 54 a 1.27 98.67 101.21
> test-mct.R: 11 3 2 2 100.01 0.63 54 a 1.27 98.74 101.28
> test-mct.R: 12 2 3 2 100.04 0.63 54 a 1.27 98.77 101.31
> test-mct.R: 13 3 1 1 100.07 0.63 54 a 1.27 98.80 101.34
> test-mct.R: 14 1 3 1 100.19 0.63 54 a 1.27 98.92 101.46
> test-mct.R: 15 2 2 1 100.21 0.63 54 a 1.27 98.94 101.48
> test-mct.R: 16 1 3 3 100.22 0.63 54 a 1.27 98.95 101.49
> test-mct.R: 17 3 2 1 100.31 0.63 54 a 1.27 99.04 101.58
> test-mct.R: 18 3 3 3 100.32 0.63 54 a 1.27 99.05 101.59
> test-mct.R: 19 2 2 3 100.37 0.63 54 a 1.27 99.10 101.64
> test-mct.R: 20 1 1 2 100.46 0.63 54 a 1.27 99.19 101.73
> test-mct.R: 21 3 2 3 100.48 0.63 54 a 1.27 99.21 101.75
> test-mct.R: 22 1 2 2 100.48 0.63 54 a 1.27 99.21 101.75
> test-mct.R: 23 3 1 2 100.49 0.63 54 a 1.27 99.22 101.76
> test-mct.R: 24 2 3 3 100.64 0.63 54 a 1.27 99.37 101.91
> test-mct.R: 25 1 1
> test-mct.R: 1 100.68 0.63 54 a 1.27 99.41 101.96
> test-mct.R: 26 2 2 2 100.72 0.63 54 a 1.27 99.45 101.99
> test-mct.R: 27 3 1 3 101.23 0.63 54 a 1.27 99.96 102.50
> test-utility_functions.R: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> test-utility_functions.R: | biometryassist version 1.3.3 |
> test-utility_functions.R: | Authors: Sharon Nielsen, Sam Rogers, Annie Conway |
> test-utility_functions.R: | Developed at the University of Adelaide with funding provided |
> test-utility_functions.R: | by the Australian Grains Research and Development Corporation. |
> test-utility_functions.R: | Package website: https://biometryhub.github.io/biometryassist |
> test-utility_functions.R: | |
> test-utility_functions.R: | If you have used this package in your work, please cite it. |
> test-utility_functions.R: | Type 'citation('biometryassist')' for the citation details. |
> test-utility_functions.R: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> test-utility_functions.R:
> test-utility_functions.R: NULL
> test-variogram.r: [[1]]
> test-variogram.r:
> test-variogram.r: [[1]]
> test-variogram.r:
> test-resplot.R: [[1]]
> test-resplot.R:
> test-resplot.R: [[1]]
> test-resplot.R:
> test-resplot.R: [[1]]
> test-resplot.R:
[ FAIL 3 | WARN 4 | SKIP 168 | PASS 336 ]
══ Skipped tests (168) ═════════════════════════════════════════════════════════
• On CRAN (149): 'test-all-w2.r:63:5', 'test-all-w2.r:77:5',
'test-all-w2.r:90:5', 'test-all-w2.r:103:5', 'test-all-w2.r:116:5',
'test-all-w2.r:130:5', 'test-all-w2.r:145:5', 'test-all-w2.r:162:5',
'test-all-w2.r:186:5', 'test-all-w2.r:214:5', 'test-all-w2.r:229:5',
'test-all-w2.r:243:5', 'test-all-w2.r:256:5', 'test-all-w2.r:266:5',
'test-all-w2.r:279:5', 'test-all-w2.r:292:5', 'test-all-w2.r:306:5',
'test-all-w2.r:317:5', 'test-all-w2.r:331:5', 'test-all-w2.r:345:5',
'test-all-w2.r:363:5', 'test-all-w2.r:378:5', 'test-all-w2.r:404:5',
'test-all-w2.r:433:5', 'test-des.R:1:1', 'test-des.R:14:1',
'test-heatmap.R:25:1', 'test-heatmap.R:37:1', 'test-heatmap.R:42:1',
'test-heatmap.R:47:1', 'test-heatmap.R:52:1', 'test-heatmap.R:59:1',
'test-heatmap.R:66:1', 'test-mct.R:3:1', 'test-mct.R:9:1', 'test-mct.R:71:1',
'test-mct.R:81:1', 'test-mct.R:108:1', 'test-mct.R:137:1',
'test-mct.R:159:1', 'test-mct.R:253:1', 'test-mct.R:269:1',
'test-mct.R:301:1', 'test-mct.R:323:1', 'test-mct.R:339:1',
'test-design.R:1:1', 'test-design.R:14:1', 'test-design.R:27:1',
'test-design.R:41:1', 'test-design.R:52:1', 'test-design.R:65:1',
'test-design.R:80:1', 'test-design.R:94:1', 'test-design.R:106:1',
'test-design.R:118:1', 'test-design.R:131:1', 'test-design.R:158:1',
'test-design.R:172:1', 'test-design.R:183:1', 'test-design.R:194:1',
'test-design.R:203:1', 'test-design.R:217:1', 'test-design.R:230:1',
'test-design.R:244:1', 'test-design.R:257:1', 'test-design.R:291:1',
'test-design.R:395:1', 'test-design.R:501:1', 'test-design.R:518:1',
'test-design.R:528:1', 'test-design.R:538:1', 'test-design.R:571:1',
'test-design.R:581:1', 'test-design.R:588:1', 'test-design.R:595:1',
'test-design.R:602:1', 'test-design.R:621:1', 'test-design.R:638:1',
'test-design.R:655:1', 'test-design.R:672:1', 'test-design.R:689:1',
'test-design.R:706:1', 'test-design.R:745:1', 'test-design.R:770:1',
'test-design.R:804:1', 'test-design.R:837:1', 'test-design.R:927:1',
'test-design.R:941:1', 'test-summary_graph.R:7:1',
'test-summary_graph.R:13:1', 'test-summary_graph.R:19:1',
'test-use_template.R:9:3', 'test-use_template.R:18:3',
'test-use_template.R:27:3', 'test-use_template.R:38:3',
'test-use_template.R:49:3', 'test-use_template.R:59:3',
'test-use_template.R:75:3', 'test-use_template.R:97:3',
'test-use_template.R:116:3', 'test-utility_functions.R:6:1',
'test-variogram.r:11:1', 'test-variogram.r:42:1', 'test-variogram.r:57:1',
'test-zzz_install_asreml.R:19:5', 'test-zzz_install_asreml.R:45:5',
'test-zzz_install_asreml.R:62:5', 'test-zzz_install_asreml.R:127:5',
'test-zzz_install_asreml.R:142:5', 'test-zzz_install_asreml.R:223:5',
'test-zzz_install_asreml.R:232:5', 'test-zzz_install_asreml.R:244:5',
'test-zzz_install_asreml.R:256:5', 'test-zzz_install_asreml.R:284:5',
'test-zzz_install_asreml.R:298:5', 'test-zzz_install_asreml.R:308:5',
'test-zzz_install_asreml.R:337:5', 'test-zzz_install_asreml.R:346:5',
'test-zzz_install_asreml.R:359:5', 'test-zzz_install_asreml.R:368:5',
'test-zzz_install_asreml.R:393:5', 'test-zzz_install_asreml.R:413:5',
'test-zzz_install_asreml.R:441:5', 'test-zzz_install_asreml.R:467:5',
'test-zzz_install_asreml.R:505:5', 'test-zzz_install_asreml.R:544:5',
'test-zzz_install_asreml.R:621:5', 'test-zzz_install_asreml.R:655:5',
'test-zzz_install_asreml.R:681:5', 'test-zzz_install_asreml.R:708:5',
'test-zzz_install_asreml.R:733:5', 'test-zzz_install_asreml.R:759:5',
'test-zzz_install_asreml.R:783:5', 'test-zzz_install_asreml.R:816:5',
'test-zzz_install_asreml.R:849:5', 'test-zzz_install_asreml.R:882:5',
'test-zzz_install_asreml.R:906:5', 'test-zzz_install_asreml.R:930:5',
'test-zzz_install_asreml.R:947:5', 'test-zzz_install_asreml.R:966:5',
'test-resplot.R:17:1', 'test-resplot.R:23:1', 'test-resplot.R:33:1',
'test-resplot.R:40:5', 'test-resplot.R:68:1', 'test-resplot.R:86:1',
'test-resplot.R:94:1', 'test-resplot.R:113:1', 'test-resplot.R:124:1'
• On Linux (2): 'test-resplot.R:81:5', 'test-resplot.R:109:5'
• rlang::is_installed("asreml") is not TRUE (8): 'test-logltest.R:4:5',
'test-logltest.R:26:5', 'test-logltest.R:34:5', 'test-logltest.R:47:5',
'test-logltest.R:59:5', 'test-logltest.R:75:5', 'test-logltest.R:92:5',
'test-logltest.R:98:5'
• {Matrix} is not installed (1): 'test-mct.R:94:5'
• {asreml} is not installed (4): 'test-mct.R:121:5', 'test-mct.R:172:5',
'test-mct.R:227:5', 'test-mct.R:235:5'
• {lme4} is not installed (2): 'test-mct.R:242:5', 'test-resplot.R:62:5'
• {openxlsx} is not installed (2): 'test-export_excel.R:33:3',
'test-export_excel.R:49:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-export_excel.R:7:3'): export_design_to_excel returns correct layout matrix ──
Error in `export_design_to_excel(df, value_column = "treatments")`: Package 'openxlsx' is required for Excel export but is not installed.
Install it with: install.packages('openxlsx')
Backtrace:
▆
1. └─biometryassist::export_design_to_excel(df, value_column = "treatments") at test-export_excel.R:7:3
── Error ('test-export_excel.R:16:3'): export_design_to_excel errors if required columns are missing ──
Error in `export_design_to_excel(df, value_column = "treatments")`: Package 'openxlsx' is required for Excel export but is not installed.
Install it with: install.packages('openxlsx')
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-export_excel.R:16:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─biometryassist::export_design_to_excel(df, value_column = "treatments")
── Error ('test-export_excel.R:27:3'): export_design_to_excel works with a list input ──
Error in `export_design_to_excel(design_list, value_column = "treatments")`: Package 'openxlsx' is required for Excel export but is not installed.
Install it with: install.packages('openxlsx')
Backtrace:
▆
1. └─biometryassist::export_design_to_excel(design_list, value_column = "treatments") at test-export_excel.R:27:3
[ FAIL 3 | WARN 4 | SKIP 168 | PASS 336 ]
Deleting unused snapshots: 'all-w2/example1autoplot.svg',
'all-w2/example2autoplot.svg', 'all-w2/example3autoplot.svg',
'all-w2/example3lmmautoplot.svg', 'all-w2/example4autoplot.svg',
'all-w2/example4lmmautoplot.svg', 'all-w2/example5lmmautoplot1.svg',
'all-w2/example5lmmautoplot2.svg', 'all-w2/example6lmmautoplot2.svg',
'all-w2/example7lmmautoplot.svg', 'all-w2/exercise10autoplot.svg',
'all-w2/exercise11autoplot1.svg', 'all-w2/exercise11autoplot2.svg',
'all-w2/exercise12autoplot.svg', 'all-w2/exercise13autoplot1.svg',
'all-w2/exercise13autoplot2.svg', 'all-w2/exercise14autoplot.svg',
'all-w2/exercise15autoplot1.svg', …, 'mct/interactions-work.svg', and
'mct/lme4-output.svg'
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.3
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: ‘asreml’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64