Last updated on 2025-12-06 00:49:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 6.20 | 54.97 | 61.17 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 4.01 | 32.32 | 36.33 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 13.00 | 77.58 | 90.58 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 14.00 | 70.86 | 84.86 | OK | |
| r-devel-windows-x86_64 | 0.1.0 | 7.00 | 63.00 | 70.00 | OK | |
| r-patched-linux-x86_64 | 0.1.0 | 6.26 | 48.36 | 54.62 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 6.16 | 49.57 | 55.73 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | 8.00 | 40.00 | 48.00 | OK | |
| r-release-windows-x86_64 | 0.1.0 | 8.00 | 64.00 | 72.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.0 | 5.00 | 45.00 | 50.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.0 | 12.00 | 79.00 | 91.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘SpoMAG-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict_sporulation
> ### Title: Predict Sporulation Potential
> ### Aliases: predict_sporulation
>
> ### ** Examples
>
> # Load package
> library(SpoMAG)
>
> # Load example annotation tables
> file_spor <- system.file("extdata", "one_sporulating.csv.gz", package = "SpoMAG")
> file_aspo <- system.file("extdata", "one_asporogenic.csv.gz", package = "SpoMAG")
>
> # Read files
> df_spor <- readr::read_csv(file_spor, show_col_types = FALSE)
> df_aspo <- readr::read_csv(file_aspo, show_col_types = FALSE)
>
> # Step 1: Extract sporulation-related genes
> genes_spor <- sporulation_gene_name(df_spor)
Looking for genes related to Sporulation Onset and Checkpoints
Looking for genes related to Spo0A Regulon
Looking for genes related to Engulfment
Looking for genes related to SigF Regulon
Looking for genes related to SigG Regulon
Looking for genes related to SigE Regulon
Looking for genes related to SigK Regulon
Looking for genes related to Spore Cortex
Looking for genes related to Spore Coat
Looking for genes related to Germination
> genes_aspo <- sporulation_gene_name(df_aspo)
Looking for genes related to Sporulation Onset and Checkpoints
Looking for genes related to Spo0A Regulon
Looking for genes related to Engulfment
Looking for genes related to SigF Regulon
Looking for genes related to SigG Regulon
Looking for genes related to SigE Regulon
Looking for genes related to SigK Regulon
Looking for genes related to Spore Cortex
Looking for genes related to Spore Coat
Looking for genes related to Germination
>
> # Step 2: Convert to binary matrix
> bin_spor <- build_binary_matrix(genes_spor)
> bin_aspo <- build_binary_matrix(genes_aspo)
>
> # Step 3: Predict using ensemble model (preloaded in package)
>
> result_spor <- predict_sporulation(bin_spor)
Warning: namespace ‘caret’ is not available and has been replaced
by .GlobalEnv when processing object ‘rf_model’
Error in predict_sporulation(bin_spor) : Package caret is required
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc