Last updated on 2025-12-06 00:48:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-21 | 2.87 | 188.98 | 191.85 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1-21 | 2.23 | 95.86 | 98.09 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1-21 | 265.44 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-21 | 282.36 | OK | |||
| r-devel-windows-x86_64 | 1.1-21 | 5.00 | 96.00 | 101.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.1-21 | 3.73 | 160.23 | 163.96 | OK | |
| r-release-linux-x86_64 | 1.1-21 | 2.71 | 182.92 | 185.63 | OK | |
| r-release-macos-arm64 | 1.1-21 | OK | ||||
| r-release-macos-x86_64 | 1.1-21 | 4.00 | 296.00 | 300.00 | OK | |
| r-release-windows-x86_64 | 1.1-21 | 8.00 | 85.00 | 93.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.1-21 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1-21 | 3.00 | 316.00 | 319.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1-21 | 6.00 | 151.00 | 157.00 | OK | --no-vignettes |
Version: 1.1-21
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
Note: skipping ‘Ch_analysing_longitudinal_dataI.Rnw’ due to unavailable dependencies:
'lme4'
--- re-building ‘Ch_analysing_longitudinal_dataII.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Error: processing vignette 'Ch_analysing_longitudinal_dataII.Rnw' failed with diagnostics:
chunk 26 (label = ALDII-respiratory-lmer)
Error in library("lme4") : there is no package called 'lme4'
--- failed re-building 'Ch_analysing_longitudinal_dataII.Rnw'
--- re-building ‘Ch_analysis_of_variance.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Error: processing vignette 'Ch_analysis_of_variance.Rnw' failed with diagnostics:
chunk 3 (label = ANOVA-setup)
Error in library("wordcloud") : there is no package called 'wordcloud'
--- failed re-building 'Ch_analysis_of_variance.Rnw'
--- re-building ‘Ch_cluster_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Package 'mclust' version 6.1.2
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: 'mvtnorm'
The following object is masked from 'package:mclust':
dmvnorm
--- finished re-building 'Ch_cluster_analysis.Rnw'
--- re-building ‘Ch_conditional_inference.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: survival
Warning in chisq.test(suicides) :
Chi-squared approximation may be incorrect
Warning in approximate(B = 19999) :
'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_conditional_inference.Rnw'
--- re-building ‘Ch_density_estimation.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: lattice
Attaching package: 'boot'
The following object is masked from 'package:flexmix':
boot
The following object is masked from 'package:lattice':
melanoma
Package 'mclust' version 6.1.2
Type 'citation("mclust")' for citing this R package in publications.
Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
argument 'replacement' has length > 1 and only the first element will be used
--- finished re-building 'Ch_density_estimation.Rnw'
--- re-building ‘Ch_errata.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_errata.Rnw'
--- re-building ‘Ch_gam.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: nlme
This is mgcv 1.9-4. For overview type '?mgcv'.
Loading required package: parallel
Loading required package: stabs
Error: processing vignette 'Ch_gam.Rnw' failed with diagnostics:
chunk 3 (label = packages)
Error in library("wordcloud") : there is no package called 'wordcloud'
--- failed re-building 'Ch_gam.Rnw'
--- re-building ‘Ch_graphical_display.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_graphical_display.Rnw'
--- re-building ‘Ch_introduction_to_R.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Error in quantile.default(x, prob = c(0.25, 0.75), names = FALSE) :
missing values and NaN's not allowed if 'na.rm' is FALSE
--- finished re-building 'Ch_introduction_to_R.Rnw'
--- re-building ‘Ch_logistic_regression_glm.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'Ch_logistic_regression_glm.Rnw'
--- re-building ‘Ch_meta_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_meta_analysis.Rnw'
Note: skipping ‘Ch_multidimensional_scaling.Rnw’ due to unavailable dependencies:
'ape'
--- re-building ‘Ch_multiple_linear_regression.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Error: processing vignette 'Ch_multiple_linear_regression.Rnw' failed with diagnostics:
chunk 3 (label = MLR-setup)
Error in library("wordcloud") : there is no package called 'wordcloud'
--- failed re-building 'Ch_multiple_linear_regression.Rnw'
--- re-building ‘Ch_principal_components_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_principal_components_analysis.Rnw'
--- re-building ‘Ch_recursive_partitioning.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: grid
randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Loading required package: sandwich
Loading required package: libcoin
Attaching package: 'partykit'
The following objects are masked from 'package:party':
cforest, ctree, ctree_control, edge_simple, mob,
mob_control, node_barplot, node_bivplot,
node_boxplot, node_inner, node_surv, node_terminal,
varimp
--- finished re-building 'Ch_recursive_partitioning.Rnw'
--- re-building ‘Ch_simple_inference.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: grid
--- finished re-building 'Ch_simple_inference.Rnw'
Note: skipping ‘Ch_simultaneous_inference.Rnw’ due to unavailable dependencies:
'lme4'
--- re-building ‘Ch_survival_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: grid
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Loading required package: sandwich
Warning in plot.window(...) :
"legend.text" is not a graphical parameter
Warning in plot.window(...) : "legend.bty" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in box(...) : "legend.text" is not a graphical parameter
Warning in box(...) : "legend.bty" is not a graphical parameter
Warning in title(...) : "legend.text" is not a graphical parameter
Warning in title(...) : "legend.bty" is not a graphical parameter
Warning in approximate(B = 10000) :
'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_survival_analysis.Rnw'
SUMMARY: processing the following files failed:
‘Ch_analysing_longitudinal_dataII.Rnw’ ‘Ch_analysis_of_variance.Rnw’
‘Ch_gam.Rnw’ ‘Ch_multiple_linear_regression.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc