| align | Perform Smith-Waterman alignment of a read against a reference sequence |
| force_align | Perform forced alignment with increased gap open penalty |
| formatter | Format and pretty-print SSW forced alignment results without truncation |
| install_ssw_py | Install ssw-py and its dependencies |
| is_installed_ssw_py | Is ssw-py installed? |
| print.ssw | Print SSW alignment results |
| ssw_py | Global reference to ssw-py |