| assemble | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| barplot-method | Class '"plasma"' |
| combineAllWeights | Class '"CombinedWeights"' |
| CombinedWeights | Class '"CombinedWeights"' |
| CombinedWeights-class | Class '"CombinedWeights"' |
| Contribution | Class '"Contribution"' |
| Contribution-class | Class '"Contribution"' |
| fitCoxModels | Class '"MultiplePLSCoxModels"' |
| fitSingleModel | Class '"SingleModel"' |
| getAllWeights | Class '"Contribution"' |
| getCompositeWeights | Class '"Contribution"' |
| getFinalWeights | Class '"Contribution"' |
| getSizes | Class '"MultiplePLSCoxModels"' |
| getTop | Class '"Contribution"' |
| heat | Class '"Contribution"' |
| heat-method | Class '"Contribution"' |
| image-method | Class '"Contribution"' |
| image-method | Class '"CombinedWeights"' |
| interpret | Class '"CombinedWeights"' |
| loadESCAdata | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| loadLUSCdata | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| m450info | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| meanModeImputer | Imputation |
| mirESCA | ESCA type data |
| MultiOmics | Class '"MultiOmics"' |
| MultiOmics-class | Class '"MultiOmics"' |
| MultiplePLSCoxModels | Class '"MultiplePLSCoxModels"' |
| MultiplePLSCoxModels-class | Class '"MultiplePLSCoxModels"' |
| Outcome | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| pickSignificant | Class '"Contribution"' |
| plasma | Class '"plasma"' |
| plasma-class | Class '"plasma"' |
| plasmaEnv | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| plasmaPredictions | Class '"plasmaPredictions"' |
| plasmaPredictions-class | Class '"plasmaPredictions"' |
| plot-method | Class '"MultiOmics"' |
| plot-method | Class '"SingleModel"' |
| plot-method | Class '"MultiplePLSCoxModels"' |
| plot-method | Class '"plasma"' |
| plot-method | Class '"plasmaPredictions"' |
| predict-method | Class '"SingleModel"' |
| predict-method | Class '"MultiplePLSCoxModels"' |
| predict-method | Class '"plasma"' |
| prepareMultiOmics | Class '"MultiOmics"' |
| samplingImputer | Imputation |
| SingleModel-class | Class '"SingleModel"' |
| stdize | Class '"CombinedWeights"' |
| summary-method | Class '"MultiOmics"' |
| summary-method | Class '"SingleModel"' |
| summary-method | Class '"MultiplePLSCoxModels"' |
| summary-method | Class '"plasma"' |
| summary-method | Class '"Contribution"' |
| summary-method | Class '"CombinedWeights"' |
| TCGA-ESCA | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| TCGA-LUSC | Esophageal carcinoma (ESCA) data or lung squamous cell carcinoma (LUSC) data from The Cancer Genome Atlas (TCGA). |
| tfESCA | ESCA type data |
| validMultiOmics | Class '"MultiOmics"' |
| validMultipleCoxModels | Class '"MultiplePLSCoxModels"' |
| [-method | Class '"MultiOmics"' |
| [-method | Class '"MultiplePLSCoxModels"' |
| [-method | Class '"Contribution"' |