R Interface to Geochemical Modeling Software

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Documentation for package ‘phreeqc’ version 3.8.7

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phreeqc-package R interface to the PHREEQC geochemical modeling program.
Amm.dat The Amm.dat database.
ColdChem.dat The ColdChem.dat database.
core10.dat The core10.dat database
ex1 Example 1-Speciation Calculation
ex10 Example 10-Aragonite-Strontianite Solid Solution
ex11 Example 11-Transport and Cation Exchange
ex12 Example 12-Advective and Diffusive Flux of Heat and Solutes
ex13a Example 13-Aragonite-Strontianite Solid Solution
ex13b Example 13-Aragonite-Strontianite Solid Solution
ex13c Example 13-Aragonite-Strontianite Solid Solution
ex14 Example 14-Advective Transport, Cation Exchange, Surface Complexation, and Mineral Equilibria
ex15 Example 15-1D Transport: Kinetic Biodegradation, Cell Growth, and Sorption
ex15.dat The ex15.dat database
ex16 Example 16-Inverse Modeling of Sierra Spring Waters
ex17 Example 17-Inverse Modeling With Evaporation
ex18 Example 18-Inverse Modeling of the Madison Aquifer
ex19 Example 19-Modeling Cd+2 Sorption With Linear, Freundlich, and Langmuir Isotherms, and With a Deterministic Distribution of Sorption Sites for Organic Matter, Clay Minerals, and Iron Oxyhydroxides
ex2 Example 2-Equilibration With Pure Phases
ex20a Example 20-Distribution of Isotopes Between Water and Calcite
ex20b Example 20-Distribution of Isotopes Between Water and Calcite
ex21 Example 21-Modeling Diffusion of HTO, 36Cl-, 22Na+, and Cs+ in a Radial Diffusion Cell
ex22 Example 22-Modeling Gas Solubilities: CO2 at High Pressures
ex3 Example 3-Mixing
ex4 Example 4-Evaporation and Homogeneous Redox Reactions
ex5 Example 5-Irreversible Reactions
ex6 Example 6-Reaction-Path Calculations
ex7 Example 7-Gas-Phase Calculations
ex8 Example 8-Surface Complexation
ex9 Example 9-Kinetic Oxidation of Dissolved Ferrous Iron With Oxygen
frezchem.dat The frezchem.dat database
iso.dat The iso.dat database.
Kinec.v2.dat Thermodynamic and rates database from Oelkers and coworkers.
Kinec_v3.dat Thermodynamic and rates database from Oelkers and coworkers.
llnl.dat The llnl.dat database.
minteq.dat The minteq.dat database.
minteq.v4.dat The minteq.v4.dat database.
phrAccumulateLine Accumulate line(s) for input to phreeqc.
phrClearAccumulatedLines Clear the accumulated input buffer.
phreeqc R interface to the PHREEQC geochemical modeling program.
phreeqc.dat The phreeqc.dat database
phreeqc_rates.dat Thermodynamic and rates database
PHREEQC_ThermoddemV1.10_15Dec2020.dat Thermochemical Database from the BRGM institute (French Geological Survey)
phrGetAccumulatedLines Retrieve the accumulated input.
phrGetComponentList Retrieve a list containing the current list of components.
phrGetDumpFileName Retrieve the name of the dump file.
phrGetDumpFileOn Retrieve the current value of the dump file switch.
phrGetDumpStrings Retrieve DUMP strings.
phrGetDumpStringsOn Retrieve the current value of the dump strings switch.
phrGetErrorFileName Retrieve the name of the error file.
phrGetErrorFileOn Retrieve the current value of the error file switch.
phrGetErrorStrings Retrieve error string messages.
phrGetErrorStringsOn Retrieve the current value of the error strings switch.
phrGetLogFileName Retrieve the name of the log file.
phrGetLogFileOn Retrieve the current value of the log file switch.
phrGetLogStrings Retrieve log output.
phrGetLogStringsOn Retrieve the current value of the log strings switch.
phrGetOutputFileName Retrieve the name of the output file.
phrGetOutputFileOn Retrieve the current value of the output file switch.
phrGetOutputStrings Retrieve standard phreeqc output.
phrGetOutputStringsOn Retrieve the current value of the output strings switch.
phrGetSelectedOutput Returns the contents of the selected output as a list of data frames.
phrGetSelectedOutputFileName Retrieve the name of the selected_output file.
phrGetWarningStrings Retrieve warning messages.
phrLoadDatabase Load a phreeqc database file
phrLoadDatabaseString Load a phreeqc database as a string or a list of strings.
phrRunAccumulated Runs the accumulated input.
phrRunFile Run phreeqc input file
phrRunString Runs phreeqc using the given string as input.
phrSetDumpFileName Set the name of the dump file.
phrSetDumpFileOn Set the dump file on/off.
phrSetDumpStringsOn Set dump strings on/off.
phrSetErrorFileName Set the name of the error file.
phrSetErrorFileOn Set error file on/off.
phrSetErrorStringsOn Set error strings on/off.
phrSetLogFileName Set the name of the log file.
phrSetLogFileOn Set log file on/off.
phrSetLogStringsOn Set log strings on/off.
phrSetOutputFileName Set the name of the output file.
phrSetOutputFileOn Set output file on/off.
phrSetOutputStringsOn Set output strings on/off.
phrSetSelectedOutputFileName Set the name of the selected_output file.
phrSetSelectedOutputFileOn Set selected_output file on/off.
pitzer.dat The pitzer.dat database.
sit.dat The sit.dat database.
stimela.dat The stimela.dat database.
Tipping_Hurley.dat The Tipping_Hurley.dat database
wateq4f.dat The wateq4f.dat database.