Multiscale Codependence Analysis

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Documentation for package ‘codep’ version 1.2-4

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codep-package Multiscale Codependence Analysis
cdp-class Class and Methods for Multiscale Codependence Analysis (MCA)
codep_PACKAGE Multiscale Codependence Analysis
cthreshold Familywise Type I Error Rate
Doubs The Doubs Fish Data
Doubs.env The Doubs Fish Data
Doubs.fish The Doubs Fish Data
Doubs.geo The Doubs Fish Data
dphi Frequency Distributions for MCA Parametric Testing
dtau Frequency Distributions for MCA Parametric Testing
eigenmap Spatial Eigenvector Maps
eigenmap-class Class and Methods for Spatial Eigenvector Maps
eigenmap.score Spatial Eigenvector Maps
Euclid Calculation of the Euclidean Distance
fitted.cdp Class and Methods for Multiscale Codependence Analysis (MCA)
geodesics Calculation of Geodesic Distances
LGDat Legendre and Gallagher Synthetic Example
LGTransforms Transformation for Species Abundance Data
MCA Multiple-descriptors, Multiscale Codependence Analysis
minpermute Number of Permutations for MCA
mite The Oribatid Mite Data Set
mite.env The Oribatid Mite Data Set
mite.geo The Oribatid Mite Data Set
mite.species The Oribatid Mite Data Set
parPermute.cdp Multiple-descriptors, Multiscale Codependence Analysis
permute.cdp Multiple-descriptors, Multiscale Codependence Analysis
plot.cdp Class and Methods for Multiscale Codependence Analysis (MCA)
plot.eigenmap Class and Methods for Spatial Eigenvector Maps
pphi Frequency Distributions for MCA Parametric Testing
predict.cdp Class and Methods for Multiscale Codependence Analysis (MCA)
print.cdp Class and Methods for Multiscale Codependence Analysis (MCA)
print.eigenmap Class and Methods for Spatial Eigenvector Maps
product-distribution Frequency Distributions for MCA Parametric Testing
ptau Frequency Distributions for MCA Parametric Testing
residuals.cdp Class and Methods for Multiscale Codependence Analysis (MCA)
salmon The St. Marguerite River Altantic Salmon Parr Transect
summary.cdp Class and Methods for Multiscale Codependence Analysis (MCA)
test.cdp Multiple-descriptors, Multiscale Codependence Analysis
weighting-functions Weighting Functions for Spatial Eigenvector Map
wf.binary Weighting Functions for Spatial Eigenvector Map
wf.Drayf1 Weighting Functions for Spatial Eigenvector Map
wf.Drayf2 Weighting Functions for Spatial Eigenvector Map
wf.Drayf3 Weighting Functions for Spatial Eigenvector Map
wf.PCNM Weighting Functions for Spatial Eigenvector Map
wf.RBF Weighting Functions for Spatial Eigenvector Map
wf.sqrd Weighting Functions for Spatial Eigenvector Map