| compose | Compose Permutations |
| count.perms | Count permutations at a distance |
| cycle2str | Friendly display the cycles |
| cycles2perm | Get the permutation given the cycles |
| data.apa | Sample of permutations APA |
| data.order | Sample of permutations |
| decomp2perm | Get a permutation consistent with a decomposition vector |
| dgmm | Calculate the probability of a permutation in a GMM |
| distance | Compute the distance between permutations |
| dmm | Calculate the probability of a permutation in a MM |
| expectation.gmm | Compute the expected distance, GMM under the Hamming distance |
| expectation.mm | Compute the expected distance, MM under the Hamming distance |
| freq.matrix | Compute the frequency matrix |
| generate.aux.files | Generates the files for Ulam |
| identity.permutation | Generate identity the permutation |
| insert | Insert operator |
| inverse.perm | Generate inverse permutation |
| inversion | Inversion operator |
| is.permutation | Check if its argument is a permutation |
| lgmm | Learn a Generalized Mallows Model |
| lgmm.theta | MLE for theta - Generalized Mallows Model |
| lmm | Learn a Mallows Model |
| lmm.theta | MLE for theta - Mallows Model |
| marginal | Compute the marginal probability, GMM under the Hamming distance |
| maxi.dist | Get the maximum value of the distance ebtween permutations |
| order.ratings | Convert rating to permutation |
| perm.sample.med | Sample of permutations |
| perm.sample.small | Sample of permutations |
| perm2cycles | Decompose a permutation in a set of cycles |
| perm2decomp | Get the decomposition vector |
| permutations.of | Generate every permutation of perm.length item |
| rdist.perm | Generate a collection of permutations at a given distance |
| read.perms | Read a text file with a collection of permutations |
| rgmm | Sample a Generalized Mallows Model |
| rmm | Sample a Mallows Model |
| runif.permutation | Random permutation |
| swap | Swap two items of a permutation |