| HiddenMarkov-package | Overview of Package HiddenMarkov |
| backward | Forward and Backward Probabilities of DTHMM |
| BaumWelch | Estimation Using Baum-Welch Algorithm |
| BaumWelch.dthmm | Estimation Using Baum-Welch Algorithm |
| BaumWelch.mmglm0 | Estimation Using Baum-Welch Algorithm |
| BaumWelch.mmglm1 | Estimation Using Baum-Welch Algorithm |
| BaumWelch.mmglmlong1 | Estimation Using Baum-Welch Algorithm |
| BaumWelch.mmpp | Estimation Using Baum-Welch Algorithm |
| bwcontrol | Control Parameters for Baum Welch Algorithm |
| Changes | Changes Made to Package HiddenMarkov |
| compdelta | Marginal Distribution of Stationary Markov Chain |
| Demonstration | Demonstration Examples |
| dthmm | Discrete Time HMM Object (DTHMM) |
| Estep | E-Step of EM Algorithm for DTHMM |
| Estep.mmglm1 | Markov Modulated Generalised Linear Model - 2nd Level Functions |
| Estep.mmpp | Markov Modulated Poisson Process - 2nd Level Functions |
| forward | Forward and Backward Probabilities of DTHMM |
| forwardback | Forward and Backward Probabilities of DTHMM |
| forwardback.dthmm | Forward and Backward Probabilities of DTHMM |
| forwardback.mmpp | Markov Modulated Poisson Process - 2nd Level Functions |
| HiddenMarkov | Overview of Package HiddenMarkov |
| logLik | Log Likelihood of Hidden Markov Model |
| logLik.dthmm | Log Likelihood of Hidden Markov Model |
| logLik.mmglm0 | Log Likelihood of Hidden Markov Model |
| logLik.mmglm1 | Log Likelihood of Hidden Markov Model |
| logLik.mmglmlong1 | Log Likelihood of Hidden Markov Model |
| logLik.mmpp | Log Likelihood of Hidden Markov Model |
| mchain | Markov Chain Object |
| mmglm-2nd-level-functions | Markov Modulated Generalised Linear Model - 2nd Level Functions |
| mmglm0 | Markov Modulated GLM Object |
| mmglm1 | Markov Modulated GLM Object |
| mmglmlong1 | Markov Modulated GLM Object |
| mmpp | Markov Modulated Poisson Process Object |
| mmpp-2nd-level-functions | Markov Modulated Poisson Process - 2nd Level Functions |
| Mstep | M-Step of EM Algorithm for DTHMM |
| Mstep.beta | M-Step of EM Algorithm for DTHMM |
| Mstep.binom | M-Step of EM Algorithm for DTHMM |
| Mstep.exp | M-Step of EM Algorithm for DTHMM |
| Mstep.gamma | M-Step of EM Algorithm for DTHMM |
| Mstep.glm | M-Step of EM Algorithm for DTHMM |
| Mstep.lnorm | M-Step of EM Algorithm for DTHMM |
| Mstep.logis | M-Step of EM Algorithm for DTHMM |
| Mstep.mmglm1 | Markov Modulated Generalised Linear Model - 2nd Level Functions |
| Mstep.norm | M-Step of EM Algorithm for DTHMM |
| Mstep.pois | M-Step of EM Algorithm for DTHMM |
| neglogLik | Negative Log-Likelihood |
| Pi2vector | Transform Transition or Rate Matrices to Vector |
| probhmm | Conditional Distribution Function of DTHMM |
| Q2vector | Transform Transition or Rate Matrices to Vector |
| residuals | Residuals of Hidden Markov Model |
| residuals.dthmm | Residuals of Hidden Markov Model |
| residuals.mmglm0 | Residuals of Hidden Markov Model |
| residuals.mmglm1 | Residuals of Hidden Markov Model |
| residuals.mmglmlong1 | Residuals of Hidden Markov Model |
| simulate | Simulate Hidden Markov Process |
| simulate.dthmm | Simulate Hidden Markov Process |
| simulate.mchain | Simulate Hidden Markov Process |
| simulate.mmglm0 | Simulate Hidden Markov Process |
| simulate.mmglm1 | Simulate Hidden Markov Process |
| simulate.mmglmlong1 | Simulate Hidden Markov Process |
| simulate.mmpp | Simulate Hidden Markov Process |
| summary | Summary of Hidden Markov Model |
| summary.dthmm | Summary of Hidden Markov Model |
| summary.mmglm0 | Summary of Hidden Markov Model |
| summary.mmglm1 | Summary of Hidden Markov Model |
| summary.mmglmlong1 | Summary of Hidden Markov Model |
| summary.mmpp | Summary of Hidden Markov Model |
| Transform-Parameters | Transform Transition or Rate Matrices to Vector |
| vector2Pi | Transform Transition or Rate Matrices to Vector |
| vector2Q | Transform Transition or Rate Matrices to Vector |
| Viterbi | Viterbi Algorithm for Hidden Markov Model |
| Viterbi.dthmm | Viterbi Algorithm for Hidden Markov Model |
| Viterbi.mmglm0 | Viterbi Algorithm for Hidden Markov Model |
| Viterbi.mmglm1 | Viterbi Algorithm for Hidden Markov Model |
| Viterbi.mmglmlong1 | Viterbi Algorithm for Hidden Markov Model |