| .onAttach | .onAttach start message |
| createFullHaplotype | Anchor gene haplotype inference |
| deletionHeatmap | Graphical output of single chromosome deletions |
| deletionsByBinom | Double chromosome deletion by relative gene usage |
| deletionsByVpooled | Single chromosomal D or J gene deletions inferred by the V pooled method |
| GENE.loc | Human Gene order on the chromosome |
| geneUsage | Double chromosome deletion by relative gene usage |
| GERM | Human germlines |
| hapDendo | Hierarchical clustering of haplotypes graphical output |
| hapHeatmap | Graphical output of alleles division by chromosome |
| HDGERM | Human IGHD germlines |
| HJGERM | Human IGHJ germlines |
| HVGERM | Human IGHV germlines |
| KJGERM | Human IGKJ germlines |
| KVGERM | Human IGKV germlines |
| LJGERM | Human IGLJ germlines |
| LVGERM | Human IGKV germlines |
| nonReliableVGenes | Detect non reliable gene assignment |
| plotDeletionsByBinom | Graphical output of double chromosome deletions |
| plotDeletionsByVpooled | Graphical output for single chromosome D or J gene deletions according to V pooled method |
| plotHaplotype | Graphical output of an inferred haplotype |
| rabhit | The RAbHIT package |
| readHaplotypeDb | Read a Change-O tab-delimited database file |
| samplesHaplotype | Example haplotype inference results |
| samples_db | Example IGH human naive b-cell repertiore |