Functions to Interact with the 'FAIR Data Pipeline'

[Up] [Top]

Documentation for package ‘rDataPipeline’ version 0.54.1

Help Pages

rDataPipeline-package rDataPipeline
add_read add_read
add_write add_write
check_config check_config
check_dataproduct_exists check_dataproduct_exists
check_datetime check_datetime
check_exists Check if entry exists in the data registry
check_field check_field
check_fields check_fields
check_handle check_handle
check_integer check_integer
check_local_repo check_local_repo
check_string check_string
check_table_exists Check if table exists
check_yaml_write check_yaml_write
clean_query Clean query
create_config create_config
create_index create_index
create_version_number Create version number
download_from_database Download source file from database
download_from_url Download source file from URL
extract_id extract_id
fair_init fair_init
fair_run fair_run
fdp fdp-class
fdp-class fdp-class
fdp_resolve_read fdp_resolve_read
fdp_resolve_write fdp_resolve_write
finalise Finalise code run
findme findme
find_read_match Find matching read aliases in config file
find_write_match Find matching write aliases in config file
get_author_url get_author_url
get_components Get H5 file components
get_dataproduct get_dataproduct
get_entity Get entity from url
get_entry Return all fields associated with a table entry in the data registry
get_existing Return all entries posted to a table in the data registry
get_fields Get fields from table
get_file_hash Calculate hash from file
get_github_hash Get current GitHub hash
get_id Get ID
get_index get_index
get_max_version get_max_version
get_storage_location Get storage location from url
get_token get_token
get_url Get URL
increment_filename increment_filename
initialise Initialise code run
is_queryable Check whether fields are queryable
link_read Link path to external format data
link_write Link path for external format data
new_author Post entry to author table
new_code_repo_release Post entry to code_repo_release table
new_code_run Post entry to code_run table
new_data_product Post entry to data_product table
new_external_object Post entry to external_object table
new_file_type Post entry to file_type table
new_issue Post entry to issue table
new_keyword Post entry to keyword table
new_licence Post entry to licence table
new_namespace Post entry to namespace table
new_object Post entry to object table
new_object_component Post entry to object_component table
new_quality_controlled Post entry to quality_controlled table
new_storage_location Post entry to storage_location table
new_storage_root Post entry to storage_root table
new_user_author Post entry to user_author table
paper_exists Check whether paper exists
raise_issue raise_issue
raise_issue_config Raise issue with config file
raise_issue_repo Raise issue with remote repository
raise_issue_script Raise issue with submission script
random_hash random_hash
rDataPipeline rDataPipeline
read_array Read array component from HDF5 file
read_distribution Read distribution component from TOML file
read_estimate Read estimate component from TOML file
read_table Read table component from HDF5 file
register_issue_dataproduct register_issue_dataproduct
register_issue_script register_issue_script
remove_empty_parents remove_empty_parents
resolve_read resolve_read
resolve_version resolve_version
resolve_write resolve_data_product
validate_fields Validate fields
write_array Write array component to HDF5 file
write_distribution Write distribution component to TOML file
write_estimate Write estimate component to TOML file
write_table Write table component to HDF5 file