Penalized Cox Proportional Hazard Model for Time-Dependent Covariates

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Documentation for package ‘pcoxtime’ version 1.0.4

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coef.pcoxtime Extract coefficient estimates of pcoxtime object
coef.pcoxtimecv Extract coefficient estimates of pcoxtimecv object
coefficients.pcoxtime Extract coefficient estimates of pcoxtime object
coefficients.pcoxtimecv Extract coefficient estimates of pcoxtimecv object
concordScore Compute the concordance statistic for the pcoxtime model
concordScore.pcoxtime Compute the concordance statistic for the pcoxtime model
extractoptimal Extract optimal parameter values
extractoptimal.pcoxtimecv Extract optimal parameter values
pcoxbasehaz Compute survival curve and cumulative hazard from a pcoxtime model
pcoxbasehaz.pcoxtime Compute survival curve and cumulative hazard from a pcoxtime model
pcoxsurvfit Compute survival curve and cumulative hazard from a pcoxtime model
pcoxsurvfit.pcoxtime Compute survival curve and cumulative hazard from a pcoxtime model
pcoxtheme Set theme for pcoxtime plots
pcoxtime Fit penalized Cox model
pcoxtimecv Cross-validation for pcoxtime
plot.pcoxsurvfit Plot survival and cumulative hazard curves
plot.pcoxtimecv Plot solution path for pcoxtimecv
plot.Score Prediction performance
plot.varimp Generic method for plotting variable importance
predict.pcoxtime Prediction for pcoxtime model
predictRisk Extract predictions from pcoxtime model
predictRisk.pcoxtime Extract predictions from pcoxtime model
predictSurvProb Predict survival probabilities at various time points
predictSurvProb.pcoxtime Predict survival probabilities at various time points
print.pcoxbasehaz Print baseline hazard function data frame
print.pcoxsurvfit Print a short summary of survival function
print.pcoxtime Print coefficients from a pcoxtime object
print.pcoxtimecv Print cross-validated pcoxtime object
varimp Compute variable or coefficient importance score
varimp.pcoxtime Compute variable or coefficient importance score