Integrative Bayesian Analysis of Transcriptomic and CGH Data

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Documentation for package ‘iBATCGH’ version 1.3.1

• DESCRIPTION file.

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iBATCGH-package	Integrative Bayesian Analysis of Transcriptomic and CGH data
Center	Preprocessing - Center gene expression data
iBAT	Main - Mixture selection prior
iBATCGH	Integrative Bayesian Analysis of Transcriptomic and CGH data
iBATProbit	Main - Probit selection prior
Inference	Postprocessing - Posterior Inference
InferenceA	Postprocessing - Inference on the transition matrix
InferenceMu	Postprocessing - Inference on the vector of state specific mean
InferenceR	Postprocessing - Inference on the association matrix
InferenceSd	Postprocessing - Inference on the vector of state specific sd
InferenceXi	Postprocessing - Inference on the latent states
InitMu	Preprocessing - Initialize state specific mean vector
InitXi	Preprocessing - Initialize matrix of latent states
NCI_60	NCI-60 cancer cell lines data
RListToVector	Internal function
Scenario1	Simulated data - Scenario 1
Scenario2	Simulated data - Scenario 2
TCGA_lung	TCGA lung squamous cell carcinoma data
Tran	Preprocessing - Tran