Genetic and Isotopic Assignment Accounting for Habitat Suitability

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Documentation for package ‘gaiah’ version 0.0.4

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breeding_wiwa_genetic_posteriors Posterior probs of genetic region origin from Leave-one-out cross validation for breeding WIWAs
breeding_wiwa_isotopes Isotope values, latitude, longitude and more data from 357 breeding Wilson's warblers
comboize combine genetics, isotopes, and habitat raster with exponents as given
comboize_and_fortify prepare fortified output for multipanel plot
example_isotope_posteriors Output of 'isotope_posterior_probs' for two migrant birds.
extract_isopredictions Add the isomap prediction and sd in columns attached to the feather isotope data frame
gaiah gaiah: Genetic and Isotopic Assignment Accounting for Habitat Suitability
genetic_posteriors2rasters Convert posteriors to particular genetic reporting groups into raster
genetic_regions RasterStack showing the 6 genetic regions that Wilson's warblers may be assigned to
get_wrld_simpl return the wrld_simpl data set from maptools
great_circle_raster return a raster of great circle distances (in km)
group_birds_by_location Group bird isotope data by locations
isomap2raster convert columns of an ISOMAP isoscape to a raster object
isomap_job54152_prediction Predicted isotope values from ISOMAP
isotope_posterior_probs compute posterior probabilities of origin given isotope values
migrant_wiwa_genetic_posteriors Posterior probs of genetic region of origin for 926 WIWAs sampled during migration
migrant_wiwa_isotopes Isotope values and meta data for 688 migrating Wilson's Warblers
wiwa_breed a raster of the breeding range of Wilson's warbler
wiwa_habitat_unclipped RasterLayer showing the MaxEnt habitat suitability model unclipped by the known breeding range