Network Module-Based Model in the Differential Expression Analysis for RNA-Seq

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Documentation for package ‘SeqMADE’ version 1.0

• DESCRIPTION file.

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SeqMADE-package	Network Module-Based Model in the Differential Expression Analysis for RNA-Seq
exprs	Gene Expression Dataset
Factor	Construction of Variable Factors
moduleMatrix	Modulematrix Construction
nbGLM	Identify Differential Expression Modules Based on the Generalized Linear Model
nbGLMdir	Identify Differential Expression Modules Based on the GLM Model with Up or Down-regulated Change
nbGLMdirperm	Identify Differential Expression Modules Based on the GLM Method by Shuffling the Phenotypic Variables
networkModule	NetworkModule
SeqMADE	Network Module-Based Model in the Differential Expression Analysis for RNA-Seq