Cross-Species Analysis of Cell Identities, Markers and
Regulations
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Documentation for package ‘CACIMAR’ version 1.0.0
Help Pages
| CACIMAR_cols | CACIMAR colors palette |
| Format_Markers_Frac | Format marker genes for plotting |
| Heatmap_Cor | plot the heatmap of marker genes across different species |
| Identify_CellType | Identify cell type of each cluster |
| Identify_ConservedCellTypes | Identify conserved cell types based on power of genes and orthologs database |
| Identify_ConservedMarkers | Identify orthologs marker genes for two species |
| Identify_ConservedNetworks | Identify conserved regulatory networks |
| Identify_Markers | Identify markers of each cluster |
| OrthG_Hs_Ch | Orthologs genes database for homo sapiens and zebrafish |
| OrthG_Hs_Mm | Orthologs genes database for homo sapiens and mus musculus |
| OrthG_Hs_Zf | Orthologs genes database for homo sapiens and zebrafish |
| OrthG_Mm_Ch | Orthologs genes database for mus musculus and chicken |
| OrthG_Mm_Zf | Orthologs genes database for mus musculus and zebrafish |
| OrthG_Zf_Ch | Orthologs genes database for mus zebrafish and chicken |
| Plot_MarkersHeatmap | Plot Markers in each cell type |