Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis

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Documentation for package ‘BMTME’ version 1.0.19

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barplot.BMORSENV barplot BMORSENV graph
BME Bayesian Multi-Environment Model (BME)
BMORS Bayesian Multi-Output Regression Stacking (BMORS)
BMORS_Env Bayesian Multi-Output regression stacking for specific environment estimations
BMTME Bayes Multi-Trait Milti-Environment Model (BMTME)
boxplot.BMECV boxplot.BMECV
boxplot.BMORSCV boxplot.BMORSCV
boxplot.BMTMECV boxplot.BMTMECV
cholesky Cholesky
CV.KFold Cross-Validation with K Folds
CV.RandomPart Cross-Validation with Random Partitions
genoIranianToy Genomic values of Iranian toy dataset.
genoJapa30 Genomic values of Japa dataset.
genoJapa50 Genomic values of Japa dataset.
genoMada Genomic values of Mada dataset.
genoMaizeToy Genomic values of Maize dataset.
genoWheatToy Genomic values of Wheat toy dataset.
MaizeToy Maize Data
phenoIranianToy Phenotypic values of Iranian toy dataset.
phenoJapa30 Phenotypic values of Japa dataset.
phenoJapa50 Phenotypic values of Japa dataset.
phenoMada Phenotypic values of Mada dataset.
phenoMaizeToy Phenotypic values of Maize dataset.
phenoWheatToy Phenotypic values of Wheat toy dataset.
plot.BME plot.BME
plot.BMORSCV Plot BMORSCV Simple scatter plot comparing the observed values against the predicted values.
plot.BMTME plot.BMTME Simple scatter plot comparing the observed values against the predicted values.
print.BME Print BME information object
print.BMECV Print BMECV information object
print.BMORS Print BMORS information object
print.BMORSCV Print BMORSCV information object
print.BMORSENV Print BMORSENV information object
print.BMTME Print BMTME information object
print.BMTMECV Print BMTMECV information object
residuals.BME residuals.BME
residuals.BMTME residuals.BMTME
summary.BMECV summary.BMECV
summary.BMORSCV summary.BMORSCV
summary.BMORSENV summary.BMORSENV
summary.BMTMECV summary.BMTMECV
WheatIranianToy Wheat Iranian Toy Data
WheatJapa30 Wheat Japa 30 Data
WheatJapa50 Wheat Japa 50 Data
WheatMadaToy Wheat Mada Data
WheatToy Phenotypic values and Genetic values of Wheat toy dataset.