Automated Transcriptome Classifier Pipeline: Comprehensive
Transcriptome Analysis
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Documentation for package ‘AutoPipe’ version 0.1.6
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| AutoPipe_tSNE | Implemented t-distributed stochastic neighbor embedding |
| cons_clust | A function to plot do a Consensus clustering to validate the results |
| Groups_Sup | cluster the samples |
| read_expression_file | Input Expression File |
| rna | rna egene expression of 48 meningiomas |
| Supervised_Cluster_Heatmap | Produce a Heatmap using a Supervised clustering Algorithm |
| TopPAM | Compute Top genes |
| top_supervised | A Function for Assisting Supervised Clustering |
| UnSuperClassifier | Unsupervised Clustering |