Package: nestedcv
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Version: 0.8.0
Authors@R: 
    c(person(given = "Myles",family = "Lewis",
    role = c("aut", "cre"),
    email = "myles.lewis@qmul.ac.uk",
    comment = c(ORCID = "0000-0001-9365-5345")),
    person(given = "Athina",family = "Spiliopoulou",
    role = c("aut"),
    comment = c(ORCID = "0000-0002-5929-6585")),
    person(given = "Cankut",family = "Cubuk",
    role = c("ctb"),
    email = "c.cubuk@qmul.ac.uk",
    comment = c(ORCID = "0000-0003-4646-0849")),
    person(given = "Katriona",family = "Goldmann",
    role = c("ctb"),
    comment = c(ORCID = "0000-0002-9073-6323")),
    person(given = "Ryan C.", family = "Thompson", 
    role=c("ctb")))
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
BugReports: https://github.com/myles-lewis/nestedcv/issues
URL: https://github.com/myles-lewis/nestedcv
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package <doi:10.1093/bioadv/vbad048>. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Language: en-gb
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: caret, data.table, doParallel, foreach, future.apply, ggplot2,
        glmnet, matrixStats, matrixTests, methods, parallel, pROC,
        Rfast, RhpcBLASctl, rlang, ROCR
RoxygenNote: 7.3.2
Suggests: Boruta, CORElearn, fastshap (>= 0.1.0), gbm, ggbeeswarm,
        ggpubr, hsstan, mda, mlbench, pbapply, pls, randomForest,
        ranger, RcppEigen, rmarkdown, knitr, SuperLearner
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-03-10 17:18:14 UTC; myles
Author: Myles Lewis [aut, cre] (<https://orcid.org/0000-0001-9365-5345>),
  Athina Spiliopoulou [aut] (<https://orcid.org/0000-0002-5929-6585>),
  Cankut Cubuk [ctb] (<https://orcid.org/0000-0003-4646-0849>),
  Katriona Goldmann [ctb] (<https://orcid.org/0000-0002-9073-6323>),
  Ryan C. Thompson [ctb]
Repository: CRAN
Date/Publication: 2025-03-10 17:40:02 UTC
Built: R 4.6.0; ; 2025-07-18 10:57:24 UTC; unix
